Non-Coding RNA Search

reje24b_p3.y1

Sequence:


               
               TACTGAACGAGAAGATGAGCAAATCTGACAGCTGCGCCAATGCTGAGTGTTTGAACTGTA
GTAATGAACACCAGGAGGGCATAATACTCTGAGCCCAGGAATGGAGTGGAAGTGAGGACC
CAAGACCAGTGAGTCAATTTTTTATTCAAATGCTGGACAGCGCAGCTTGCTGATTAGAAT
AAAGACCCAAAAAAAAACTTGTCCAAGAAAACTTAAATAAATAAATAAAATATGACTCAC
AACCACAAAATAAAAATGTAGCTATCTGTATAAATCTTCATGGTGTGCAAACATGTTCAC
CTCAAGCAATCCTCAAAAGAATTCTCCACTGGCCACATTGTACAAATGAGGAAACTGAGG
CCCAAGGAAATTAAAAGAATGTCTAAAGACTGGAACCACCGTTTGTGGACTTTGTGACAC
TTACTTCTGATGTTATATATATTTGTAATTCCTTGGTCGTGTTTTAACATTTGAGCTAAT
AAGTTGAATCCATCACCAGAAAGAAAACCAGACATCCTGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTGAACGAGAAGATGAGCAAATCTGACAGCTGCGCCAATGCTGAGTGTTTGAACTGTA
GTAATGAACACCAGGAGGGCATAATACTCTGAGCCCAGGAATGGAGTGGAAGTGAGGACC
CAAGACCAGTGAGTCAATTTTTTATTCAAATGCTGGACAGCGCAGCTTGCTGATTAGAAT
AAAGACCCAAAAAAAAACTTGTCCAAGAAAACTTAAATAAATAAATAAAATATGACTCAC
AACCACAAAATAAAAATGTAGCTATCTGTATAAATCTTCATGGTGTGCAAACATGTTCAC
CTCAAGCAATCCTCAAAAGAATTCTCCACTGGCCACATTGTACAAATGAGGAAACTGAGG
CCCAAGGAAATTAAAAGAATGTCTAAAGACTGGAACCACCGTTTGTGGACTTTGTGACAC
TTACTTCTGATGTTATATATATTTGTAATTCCTTGGTCGTGTTTTAACATTTGAGCTAAT
AAGTTGAATCCATCACCAGAAAGAAAACCAGACATCCTGAAT

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-219, gnl|bosTau2|chr22 (26724253-26724483)
               

               
               1-219, gnl|canFam2|chr20 (28620173-28619258)
               

               
               1-219, gnl|echTel1|scaffold_280724 (103786-102824)
               

               
               1-219, gnl|hg17|chr3 (65663430-65664353)
               

               
               1-219, gnl|Hg17|chr3 (65663908-65664140)
               

               
               1-219, gnl|loxAfr1|scaffold_7731 (102929-102009)
               

               
               1-219, gnl|mm7|chr6 (94097977-94098820)
               

               
               1-219, gnl|Mm7|chr6 (94098429-94098631)
               

               
               1-219, gnl|oryCun1|scaffold_207089 (22066-21157)
               

               
               1-219, gnl|panTro1|chrUn_random (22691242-22690320)
               

               
               1-219, gnl|rheMac2|chr2 (70716928-70715987)
               

               
               1-219, gnl|rn3|chr4 (128565625-128566498)
               


               
               246-425, gnl|bosTau2|chr6 (32962570-32962388)
               

               
               246-425, gnl|Hg17|chr4 (41808547-41808376)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-219, gnl|bosTau2|chr22 (26724253-26724483)
               

               
               1-219, gnl|canFam2|chr20 (28620173-28619258)
               

               
               1-219, gnl|echTel1|scaffold_280724 (103786-102824)
               

               
               1-219, gnl|hg17|chr3 (65663430-65664353)
               

               
               1-219, gnl|Hg17|chr3 (65663908-65664140)
               

               
               1-219, gnl|loxAfr1|scaffold_7731 (102929-102009)
               

               
               1-219, gnl|mm7|chr6 (94097977-94098820)
               

               
               1-219, gnl|Mm7|chr6 (94098429-94098631)
               

               
               1-219, gnl|oryCun1|scaffold_207089 (22066-21157)
               

               
               1-219, gnl|panTro1|chrUn_random (22691242-22690320)
               

               
               1-219, gnl|rheMac2|chr2 (70716928-70715987)
               

               
               1-219, gnl|rn3|chr4 (128565625-128566498)
               


               
               246-425, gnl|bosTau2|chr6 (32962570-32962388)
               

               
               246-425, gnl|Hg17|chr4 (41808547-41808376)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	1-219, gnl\|bosTau2\|chr22 (26724253-26724483)
	1-219, gnl\|canFam2\|chr20 (28620173-28619258)
	1-219, gnl\|echTel1\|scaffold_280724 (103786-102824)
	1-219, gnl\|hg17\|chr3 (65663430-65664353)
	1-219, gnl\|Hg17\|chr3 (65663908-65664140)
	1-219, gnl\|loxAfr1\|scaffold_7731 (102929-102009)
	1-219, gnl\|mm7\|chr6 (94097977-94098820)
	1-219, gnl\|Mm7\|chr6 (94098429-94098631)
	1-219, gnl\|oryCun1\|scaffold_207089 (22066-21157)
	1-219, gnl\|panTro1\|chrUn_random (22691242-22690320)
	1-219, gnl\|rheMac2\|chr2 (70716928-70715987)
	1-219, gnl\|rn3\|chr4 (128565625-128566498)

	246-425, gnl\|bosTau2\|chr6 (32962570-32962388)
	246-425, gnl\|Hg17\|chr4 (41808547-41808376)