reje25b_i22.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAAATTCTGAAGAAGAGTGATGGACTTCAGAGTTGCCTAAGGCCTCTCGGGCCAGTGTAG AGCAAGGATACACCTTGCCTCAAGTTCAGGACTAAGCAGGTCACCTCAGCCTGTTCGCAA CAGAGAACTTTCAACACTGAAACTTGTGCTTCCTCTGCATTACCAAACAGCTCACAGAAC AAGGAGGGGTATTAAACCTGTTTTTTGAAGAGTCACTGAAAGCTGAGTCAGGCACGGTTG GTTGTATTCCAAAGTAAACACAGTCCAGAAAACACCTGAGTGTTTCTGCTGGCAAGGACA GATTCAGAAAATATAAAAAACCATGTTCTGGAGTAAAAGAATGTGCTGTATTCTTCCCAT AACCTATTCTCTACTGACCAAACACACTTCCTATTTCCATTAAAAAACAAAAAAAAAAAA AAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAAATTCTGAAGAAGAGTGATGGACTTCAGAGTTGCCTAAGGCCTCTCGGGCCAGTGTAG AGCAAGGATACACCTTGCCTCAAGTTCAGGACTAAGCAGGTCACCTCAGCCTGTTCGCAA CAGAGAACTTTCAACACTGAAACTTGTGCTTCCTCTGCATTACCAAACAGCTCACAGAAC AAGGAGGGGTATTAAACCTGTTTTTTGAAGAGTCACTGAAAGCTGAGTCAGGCACGGTTG GTTGTATTCCAAAGTAAACACAGTCCAGAAAACACCTGAGTGTTTCTGCTGGCAAGGACA GATTCAGAAAATATAAAAAACCATGTTCTGGAGTAAAAGAATGTGCTGTATTCTTCCCAT AACCTATTCTCTACTGACCAAACACACTTCCTATTTCCATTAAAAAACAAAAAAAAAAAA AAAAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 225-332, - strand, RNAz p=0.837102 | |
| 226-333, - strand, RNAz p=0.668878 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 225-332, - strand, RNAz p=0.837102 | |
| 226-333, - strand, RNAz p=0.668878 |
| Aligned organism(s): 20 entry(ies) | More info |
| Aligned organism(s): 20 entry(ies) | Help | Less info |
| 1-412, gnl|bosTau2|chr29 (29450491-29450086) | |
| 1-412, gnl|canFam2|chr5 (8007346-8006983) | |
| 1-412, gnl|canFam2|chr5 (8007343-8006988) | |
| 1-412, gnl|dasNov1|scaffold_152226 (930-1290) | |
| 1-412, gnl|dasNov1|scaffold_152226 (933-1285) | |
| 1-412, gnl|echTel1|scaffold_258657 (6340-5981) | |
| 1-412, gnl|echTel1|scaffold_258657 (6337-5986) | |
| 1-412, gnl|hg17|chr11 (129203473-129203830) | |
| 1-412, gnl|Hg17|chr11 (129203510-129203916) | |
| 1-412, gnl|hg17|chr9 (33752279-33752617) | |
| 1-412, gnl|mm7|chr9 (31353392-31353096) | |
| 1-412, gnl|mm7|chr9 (31353392-31353099) | |
| 1-412, gnl|oryCun1|scaffold_150736 (1740-1400) | |
| 1-412, gnl|oryCun1|scaffold_150736 (1737-1405) | |
| 1-412, gnl|panTro1|chr11 (34273179-34273525) | |
| 1-412, gnl|panTro1|chr11 (34273182-34273520) | |
| 1-412, gnl|rheMac2|chr14 (127896076-127896434) | |
| 1-412, gnl|rheMac2|chr14 (127896079-127896429) | |
| 1-412, gnl|rn3|chr8 (31212293-31211972) | |
| 1-412, gnl|rn3|chr8 (31212293-31211975) |
| Aligned organism(s): 20 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-412, gnl|bosTau2|chr29 (29450491-29450086) | |
| 1-412, gnl|canFam2|chr5 (8007346-8006983) | |
| 1-412, gnl|canFam2|chr5 (8007343-8006988) | |
| 1-412, gnl|dasNov1|scaffold_152226 (930-1290) | |
| 1-412, gnl|dasNov1|scaffold_152226 (933-1285) | |
| 1-412, gnl|echTel1|scaffold_258657 (6340-5981) | |
| 1-412, gnl|echTel1|scaffold_258657 (6337-5986) | |
| 1-412, gnl|hg17|chr11 (129203473-129203830) | |
| 1-412, gnl|Hg17|chr11 (129203510-129203916) | |
| 1-412, gnl|hg17|chr9 (33752279-33752617) | |
| 1-412, gnl|mm7|chr9 (31353392-31353096) | |
| 1-412, gnl|mm7|chr9 (31353392-31353099) | |
| 1-412, gnl|oryCun1|scaffold_150736 (1740-1400) | |
| 1-412, gnl|oryCun1|scaffold_150736 (1737-1405) | |
| 1-412, gnl|panTro1|chr11 (34273179-34273525) | |
| 1-412, gnl|panTro1|chr11 (34273182-34273520) | |
| 1-412, gnl|rheMac2|chr14 (127896076-127896434) | |
| 1-412, gnl|rheMac2|chr14 (127896079-127896429) | |
| 1-412, gnl|rn3|chr8 (31212293-31211972) | |
| 1-412, gnl|rn3|chr8 (31212293-31211975) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eje (0.0988338) |