Non-Coding RNA Search

reje30b_o16.y1

Sequence:


               
               TTCCGGACGCGGCCCTGGACGCCTCGGACACCCTGGAGTTCAACGAGGTGTTCTGGGTGT
CCATGTCCTACCCAGCCCTTCACCAGAAGACCTTAAGAGTGGACGTCTGTGGCACCGACA
GGAGCCATCTGGAGGAGTGCCTGGGAGGCGCCCAGATCAGCCTGGCTGAGGTCTGCCGGT
CCGGGGAGAGGTCGACTCGTTGGTACAACCTCCTGAGCTACAAGTACTTAAAGAAACAGA
GCAAGGAACTCAAACCAGCAGGAGCCATAGCCCCCACCCCAGGGCCCGAAAGCACGGATG
CCGTGTCTGCTCTGTTGGAACAGACAGCCGTGGAGCTGGAGAAGAGGCAGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCGGACGCGGCCCTGGACGCCTCGGACACCCTGGAGTTCAACGAGGTGTTCTGGGTGT
CCATGTCCTACCCAGCCCTTCACCAGAAGACCTTAAGAGTGGACGTCTGTGGCACCGACA
GGAGCCATCTGGAGGAGTGCCTGGGAGGCGCCCAGATCAGCCTGGCTGAGGTCTGCCGGT
CCGGGGAGAGGTCGACTCGTTGGTACAACCTCCTGAGCTACAAGTACTTAAAGAAACAGA
GCAAGGAACTCAAACCAGCAGGAGCCATAGCCCCCACCCCAGGGCCCGAAAGCACGGATG
CCGTGTCTGCTCTGTTGGAACAGACAGCCGTGGAGCTGGAGAAGAGGCAGGAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61827131|ref|XP_598693.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61827131|ref|XP_598693.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               180-284, - strand, RNAz p=0.691746

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               180-284, - strand, RNAz p=0.691746

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               143-297, gnl|bosTau2|chr7 (53124173-53124019)
               

               
               143-297, gnl|canFam2|chr4 (46501966-46501849)
               

               
               143-297, gnl|danRer3|chr21 (34597521-34597405)
               

               
               143-297, gnl|fr1|chrUn (134435818-134435905)
               

               
               143-297, gnl|galGal2|chr4 (40508048-40507921)
               

               
               143-297, gnl|hg17|chr5 (167801262-167801379)
               

               
               143-297, gnl|Hg17|chr5 (167801264-167801418)
               

               
               143-297, gnl|loxAfr1|scaffold_43538 (26129-26012)
               

               
               143-297, gnl|mm7|chr11 (35715668-35715551)
               

               
               143-297, gnl|Mm7|chr11 (35715664-35715522)
               

               
               143-297, gnl|monDom2|scaffold_6 (33642835-33642719)
               

               
               143-297, gnl|oryCun1|scaffold_200675 (39565-39682)
               

               
               143-297, gnl|panTro1|chr4 (175045368-175045485)
               

               
               143-297, gnl|rn3|chr10 (20773942-20773825)
               

               
               143-297, gnl|tetNig1|chrUn_random (84569320-84569231)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               143-297, gnl|bosTau2|chr7 (53124173-53124019)
               

               
               143-297, gnl|canFam2|chr4 (46501966-46501849)
               

               
               143-297, gnl|danRer3|chr21 (34597521-34597405)
               

               
               143-297, gnl|fr1|chrUn (134435818-134435905)
               

               
               143-297, gnl|galGal2|chr4 (40508048-40507921)
               

               
               143-297, gnl|hg17|chr5 (167801262-167801379)
               

               
               143-297, gnl|Hg17|chr5 (167801264-167801418)
               

               
               143-297, gnl|loxAfr1|scaffold_43538 (26129-26012)
               

               
               143-297, gnl|mm7|chr11 (35715668-35715551)
               

               
               143-297, gnl|Mm7|chr11 (35715664-35715522)
               

               
               143-297, gnl|monDom2|scaffold_6 (33642835-33642719)
               

               
               143-297, gnl|oryCun1|scaffold_200675 (39565-39682)
               

               
               143-297, gnl|panTro1|chr4 (175045368-175045485)
               

               
               143-297, gnl|rn3|chr10 (20773942-20773825)
               

               
               143-297, gnl|tetNig1|chrUn_random (84569320-84569231)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	143-297, gnl\|bosTau2\|chr7 (53124173-53124019)
	143-297, gnl\|canFam2\|chr4 (46501966-46501849)
	143-297, gnl\|danRer3\|chr21 (34597521-34597405)
	143-297, gnl\|fr1\|chrUn (134435818-134435905)
	143-297, gnl\|galGal2\|chr4 (40508048-40507921)
	143-297, gnl\|hg17\|chr5 (167801262-167801379)
	143-297, gnl\|Hg17\|chr5 (167801264-167801418)
	143-297, gnl\|loxAfr1\|scaffold_43538 (26129-26012)
	143-297, gnl\|mm7\|chr11 (35715668-35715551)
	143-297, gnl\|Mm7\|chr11 (35715664-35715522)
	143-297, gnl\|monDom2\|scaffold_6 (33642835-33642719)
	143-297, gnl\|oryCun1\|scaffold_200675 (39565-39682)
	143-297, gnl\|panTro1\|chr4 (175045368-175045485)
	143-297, gnl\|rn3\|chr10 (20773942-20773825)
	143-297, gnl\|tetNig1\|chrUn_random (84569320-84569231)