Non-Coding RNA Search

reje31b_f16.y1

Sequence:


               
               AGCGTGTCTCTGCTGTGAAGGACCTCATCAGACAGCTGCCAAAGCCCAATCAGGACACGA
TGCAGATTCTGTTCAGACATCTCAAAAGAGTGATAGAAAATGGCGAAAGGAACCGCATGA
CCTACCAGAGTATAGCGATTGTTTTTGGTCCCACTCTGTTAAAGCCAGAGAAGGAGACTG
GTAACATAGCGGTTCATACTGTCTACCAAAATCAGATTGTGGAATTAATTCTTCTGGAAA
TAAATTCCATCTTCGGACGTTGACTCTTACTGAAGACAACCTGTGGACTAGAAGCCGGAT
TTCATCAGCTTTCAGATCCTTAGACGTGACGTATTTTATTTTTGGACCAAGCAGTGACTG
ATTTTGCACTTTTTTGAGGGATCAGAAGGGAATGGGAGAGTCCAGATGGATGTGTGTTAG
GCCCTCATATTTGCTGCTTTGTTGCGAGTTGATAGAACTGTGTGTACTTTTGAATTAATT
TTCTCCTGAATGTTTTGCATTTCATACTCTGAATTTCAGCAAAATTCCAAACTTGCAATT
CTCACCAGTCATATACACTGGAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGTGTCTCTGCTGTGAAGGACCTCATCAGACAGCTGCCAAAGCCCAATCAGGACACGA
TGCAGATTCTGTTCAGACATCTCAAAAGAGTGATAGAAAATGGCGAAAGGAACCGCATGA
CCTACCAGAGTATAGCGATTGTTTTTGGTCCCACTCTGTTAAAGCCAGAGAAGGAGACTG
GTAACATAGCGGTTCATACTGTCTACCAAAATCAGATTGTGGAATTAATTCTTCTGGAAA
TAAATTCCATCTTCGGACGTTGACTCTTACTGAAGACAACCTGTGGACTAGAAGCCGGAT
TTCATCAGCTTTCAGATCCTTAGACGTGACGTATTTTATTTTTGGACCAAGCAGTGACTG
ATTTTGCACTTTTTTGAGGGATCAGAAGGGAATGGGAGAGTCCAGATGGATGTGTGTTAG
GCCCTCATATTTGCTGCTTTGTTGCGAGTTGATAGAACTGTGTGTACTTTTGAATTAATT
TTCTCCTGAATGTTTTGCATTTCATACTCTGAATTTCAGCAAAATTCCAAACTTGCAATT
CTCACCAGTCATATACACTGGAGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61883241|ref|XP_593732.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883241|ref|XP_593732.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               155-274, - strand, RNAz p=0.960316

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               155-274, - strand, RNAz p=0.960316

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-561, gnl|bosTau2|chrX (16371173-16371725)
               

               
               1-561, gnl|Hg17|chr10 (32137670-32136291)
               

               
               1-561, gnl|Mm7|chr18 (6231553-6230173)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-561, gnl|bosTau2|chrX (16371173-16371725)
               

               
               1-561, gnl|Hg17|chr10 (32137670-32136291)
               

               
               1-561, gnl|Mm7|chr18 (6231553-6230173)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	1-561, gnl\|bosTau2\|chrX (16371173-16371725)
	1-561, gnl\|Hg17\|chr10 (32137670-32136291)
	1-561, gnl\|Mm7\|chr18 (6231553-6230173)