Non-Coding RNA Search

reje32b_g2.y1

Sequence:


               
               CGGGAACTCCAGGTTTCTGAATTTTCTGTCTCTGAAATAGAAGAGGTAATTCTTTTCACC
CATCTACTTCATTGTAAAGTTTCTTCTTCCTAACTCTTAACAGCTTAATCcttctctagc
taccctcactctcctggtgacctcatccagtctcatggtcttaaaATATTCATATGCTGA
TGATTCCCCAGTATATTTCCAATCTGGTCAGTCATCCCTTCTGAACCTCAGGCTTACTCA
TCATCTTTGTCTCAATATGCAATAAGCAGCTCAAACTTAAAATAACAGAAGCAGGCCTCC
TGATTGTTCTCCTGTAGGTCAATGGCACCTCCATTCTTCCCATTGCTCAGCCCCCAAGCC
ATAGTGTCATCCTTGACTTCTTTTCTTCACAACCCACATCCAGTCTGTCATCAAACCCTA
TCAGCTCACTTCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGAACTCCAGGTTTCTGAATTTTCTGTCTCTGAAATAGAAGAGGTAATTCTTTTCACC
CATCTACTTCATTGTAAAGTTTCTTCTTCCTAACTCTTAACAGCTTAATCcttctctagc
taccctcactctcctggtgacctcatccagtctcatggtcttaaaATATTCATATGCTGA
TGATTCCCCAGTATATTTCCAATCTGGTCAGTCATCCCTTCTGAACCTCAGGCTTACTCA
TCATCTTTGTCTCAATATGCAATAAGCAGCTCAAACTTAAAATAACAGAAGCAGGCCTCC
TGATTGTTCTCCTGTAGGTCAATGGCACCTCCATTCTTCCCATTGCTCAGCCCCCAAGCC
ATAGTGTCATCCTTGACTTCTTTTCTTCACAACCCACATCCAGTCTGTCATCAAACCCTA
TCAGCTCACTTCAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               14-246, - strand, RNAz p=0.773124

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-246, - strand, RNAz p=0.773124

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               9-336, gnl|bosTau2|chr3 (53114065-53114386)
               

               
               9-336, gnl|canFam2|chr6 (80469661-80469417)
               

               
               9-336, gnl|dasNov1|scaffold_4643 (69357-69089)
               

               
               9-336, gnl|echTel1|scaffold_312171 (48800-49068)
               

               
               9-336, gnl|hg17|chr1 (67858223-67858483)
               

               
               9-336, gnl|Hg17|chr1 (67858882-67858267)
               

               
               9-336, gnl|loxAfr1|scaffold_16450 (50398-50122)
               

               
               9-336, gnl|mm7|chr6 (67028061-67027828)
               

               
               9-336, gnl|oryCun1|scaffold_198679 (28450-28194)
               

               
               9-336, gnl|panTro1|chr1 (66420480-66420745)
               

               
               9-336, gnl|rheMac2|chr1 (70467628-70467884)
               

               
               9-336, gnl|rn3|chr4 (96905550-96905318)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-336, gnl|bosTau2|chr3 (53114065-53114386)
               

               
               9-336, gnl|canFam2|chr6 (80469661-80469417)
               

               
               9-336, gnl|dasNov1|scaffold_4643 (69357-69089)
               

               
               9-336, gnl|echTel1|scaffold_312171 (48800-49068)
               

               
               9-336, gnl|hg17|chr1 (67858223-67858483)
               

               
               9-336, gnl|Hg17|chr1 (67858882-67858267)
               

               
               9-336, gnl|loxAfr1|scaffold_16450 (50398-50122)
               

               
               9-336, gnl|mm7|chr6 (67028061-67027828)
               

               
               9-336, gnl|oryCun1|scaffold_198679 (28450-28194)
               

               
               9-336, gnl|panTro1|chr1 (66420480-66420745)
               

               
               9-336, gnl|rheMac2|chr1 (70467628-70467884)
               

               
               9-336, gnl|rn3|chr4 (96905550-96905318)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	9-336, gnl\|bosTau2\|chr3 (53114065-53114386)
	9-336, gnl\|canFam2\|chr6 (80469661-80469417)
	9-336, gnl\|dasNov1\|scaffold_4643 (69357-69089)
	9-336, gnl\|echTel1\|scaffold_312171 (48800-49068)
	9-336, gnl\|hg17\|chr1 (67858223-67858483)
	9-336, gnl\|Hg17\|chr1 (67858882-67858267)
	9-336, gnl\|loxAfr1\|scaffold_16450 (50398-50122)
	9-336, gnl\|mm7\|chr6 (67028061-67027828)
	9-336, gnl\|oryCun1\|scaffold_198679 (28450-28194)
	9-336, gnl\|panTro1\|chr1 (66420480-66420745)
	9-336, gnl\|rheMac2\|chr1 (70467628-70467884)
	9-336, gnl\|rn3\|chr4 (96905550-96905318)