reje36b_k18.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAAAACAGTTTGCCTCAGCCCTTCGTACTGCATCCCCACAACAAAGGGAAATGATGGAT CAGGCAGCTGCTCAGTTAGCTCAGGACAATTGTGAATTAGCTTGCTGTTTTATTCAGAAG ACTGCAGTGGAAAAAGCAGGCCCTGAGATGGACAAGAGATTAGCAACTGAATTTGAGCTG AGAAAACATGCTAGGCAAGAAGGGCGCAGGTACTGTGATCCTGTTGTGTTAACATACCAA GCTGAGCGGATGCCAGAGCAAATCAGGCTAAAAGTTGGTGGTGTGGACCCAAAGCAGCTG GCTGTTTATGAAGAGTTTGCACGTAATGTGCCTGGCTTCTTGCCTACAAATGATTTAAGC CAGCCCACAGGATTTTTAGCTCAGCCCATGAAGCATGCTTGGGCAGATGATGTAGCTCAG ATTTATGATAAGTGCATTACAGAACTGGAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAAAACAGTTTGCCTCAGCCCTTCGTACTGCATCCCCACAACAAAGGGAAATGATGGAT CAGGCAGCTGCTCAGTTAGCTCAGGACAATTGTGAATTAGCTTGCTGTTTTATTCAGAAG ACTGCAGTGGAAAAAGCAGGCCCTGAGATGGACAAGAGATTAGCAACTGAATTTGAGCTG AGAAAACATGCTAGGCAAGAAGGGCGCAGGTACTGTGATCCTGTTGTGTTAACATACCAA GCTGAGCGGATGCCAGAGCAAATCAGGCTAAAAGTTGGTGGTGTGGACCCAAAGCAGCTG GCTGTTTATGAAGAGTTTGCACGTAATGTGCCTGGCTTCTTGCCTACAAATGATTTAAGC CAGCCCACAGGATTTTTAGCTCAGCCCATGAAGCATGCTTGGGCAGATGATGTAGCTCAG ATTTATGATAAGTGCATTACAGAACTGGAGCA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 51-169, + strand, RNAz p=0.784047 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 51-169, + strand, RNAz p=0.784047 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 28-169, gnl|bosTau2|chr18 (23220654-23220513) | |
| 28-169, gnl|Hg17|chr16 (57133973-57133832) | |
| 28-169, gnl|Mm7|chr8 (94330023-94329882) | |
| 271-393, gnl|bosTau2|chr18 (23219731-23219609) | |
| 271-393, gnl|canFam2|chr2 (60998395-60998252) | |
| 271-393, gnl|danRer3|chrUn (105305307-105305451) | |
| 271-393, gnl|dasNov1|scaffold_6683 (18839-18696) | |
| 271-393, gnl|echTel1|scaffold_111677 (348-491) | |
| 271-393, gnl|fr1|chrUn (279560963-279561095) | |
| 271-393, gnl|galGal2|chr11 (1355438-1355594) | |
| 271-393, gnl|hg17|chr16 (57132900-57133043) | |
| 271-393, gnl|Hg17|chr16 (57133028-57132906) | |
| 271-393, gnl|loxAfr1|scaffold_21799 (12402-12259) | |
| 271-393, gnl|mm7|chr8 (94328756-94328899) | |
| 271-393, gnl|Mm7|chr8 (94328884-94328762) | |
| 271-393, gnl|monDom2|scaffold_63 (8290113-8290258) | |
| 271-393, gnl|panTro1|chr18 (51252208-51252351) | |
| 271-393, gnl|rheMac2|chr20 (56897967-56898110) | |
| 271-393, gnl|rn3|chr19 (9789489-9789345) | |
| 271-393, gnl|tetNig1|chrUn_random (139870779-139870651) | |
| 271-393, gnl|xenTro1|scaffold_671 (658017-657862) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 28-169, gnl|bosTau2|chr18 (23220654-23220513) | |
| 28-169, gnl|Hg17|chr16 (57133973-57133832) | |
| 28-169, gnl|Mm7|chr8 (94330023-94329882) | |
| 271-393, gnl|bosTau2|chr18 (23219731-23219609) | |
| 271-393, gnl|canFam2|chr2 (60998395-60998252) | |
| 271-393, gnl|danRer3|chrUn (105305307-105305451) | |
| 271-393, gnl|dasNov1|scaffold_6683 (18839-18696) | |
| 271-393, gnl|echTel1|scaffold_111677 (348-491) | |
| 271-393, gnl|fr1|chrUn (279560963-279561095) | |
| 271-393, gnl|galGal2|chr11 (1355438-1355594) | |
| 271-393, gnl|hg17|chr16 (57132900-57133043) | |
| 271-393, gnl|Hg17|chr16 (57133028-57132906) | |
| 271-393, gnl|loxAfr1|scaffold_21799 (12402-12259) | |
| 271-393, gnl|mm7|chr8 (94328756-94328899) | |
| 271-393, gnl|Mm7|chr8 (94328884-94328762) | |
| 271-393, gnl|monDom2|scaffold_63 (8290113-8290258) | |
| 271-393, gnl|panTro1|chr18 (51252208-51252351) | |
| 271-393, gnl|rheMac2|chr20 (56897967-56898110) | |
| 271-393, gnl|rn3|chr19 (9789489-9789345) | |
| 271-393, gnl|tetNig1|chrUn_random (139870779-139870651) | |
| 271-393, gnl|xenTro1|scaffold_671 (658017-657862) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eje (0.0988338) |