Non-Coding RNA Search

reje38b_n12.y1

Sequence:


               
               CCGGGAGGTGGAACCTCACCCAAGAGATGGGTAAGCGAGGGGGCCCTCAGAACAGACAAG
CGTGTGTTTCTCAGCCCTGTGTCCTTGGCAGAGCTGCTCCCCATCAGGGCCCGCGTCATC
TAAGCCCTCCAGCGCCCCCTGTGAAGGGGCTGGCCAGGGGGTCCGAGCCGCCCCCACCCC
CCAGCCTCACAGCCAGGAGCACCGCCCGCAGGGCCCCCAGACACACACACACACACACAC
ACACACACACACACAGTGGACAGACGGGCTGACAGACACACGTGGCCCGGGTTCCTCCAT
TTCCCTGGCCTGTCCCCCCGACCCTCCAACAGCACCCCCTCCTTACCCCGCAGGACGGGC
CTACAGGGGGTCTCCTCCCCTCACCCCTGCACCCCCGGGCTGGGGGAGCTGGCTCTGCCC
TGCCCTCCTTGCCCGGGGTTGGGGTCTCAGCCCCCCAGAGCCCGCTGGTGCACCTGTTAC
TGTTGGACTTTCCACTGAGATCTACTGGATAAAGAATAAAGTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGAGGTGGAACCTCACCCAAGAGATGGGTAAGCGAGGGGGCCCTCAGAACAGACAAG
CGTGTGTTTCTCAGCCCTGTGTCCTTGGCAGAGCTGCTCCCCATCAGGGCCCGCGTCATC
TAAGCCCTCCAGCGCCCCCTGTGAAGGGGCTGGCCAGGGGGTCCGAGCCGCCCCCACCCC
CCAGCCTCACAGCCAGGAGCACCGCCCGCAGGGCCCCCAGACACACACACACACACACAC
ACACACACACACACAGTGGACAGACGGGCTGACAGACACACGTGGCCCGGGTTCCTCCAT
TTCCCTGGCCTGTCCCCCCGACCCTCCAACAGCACCCCCTCCTTACCCCGCAGGACGGGC
CTACAGGGGGTCTCCTCCCCTCACCCCTGCACCCCCGGGCTGGGGGAGCTGGCTCTGCCC
TGCCCTCCTTGCCCGGGGTTGGGGTCTCAGCCCCCCAGAGCCCGCTGGTGCACCTGTTAC
TGTTGGACTTTCCACTGAGATCTACTGGATAAAGAATAAAGTTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               292-479, - strand, RNAz p=0.999864

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               292-479, - strand, RNAz p=0.999864

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               292-479, 63241 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|AW484958.1|), 
blast E-value=0, identity=90.05% 
               

               
               292-479, UMC-bend_0A01-011-a01 Day 5 Uterus bend Bos taurus cDNA 3', mRNA 
(gb|CK779244.1|), blast E-value=1.4013e-45, identity=89.53% 
               

               
               292-479, 1366432 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN533544.1|), 
blast E-value=0, identity=90.05% 
               

               
               292-479, 1371981 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN535922.1|), 
blast E-value=0, identity=90.05% 
               

               
               335-479, 1373517 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN537349.1|), 
blast E-value=1.4013e-45, identity=93.24% 
               

               
               334-479, GL-Cf-12122 GLGC-LIB0001-cf Canis familiaris Normalized Mixed 
(gb|DN755326.1|), blast E-value=0, identity=93.24%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               292-479, 63241 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|AW484958.1|), 
blast E-value=0, identity=90.05% 
               

               
               292-479, UMC-bend_0A01-011-a01 Day 5 Uterus bend Bos taurus cDNA 3', mRNA 
(gb|CK779244.1|), blast E-value=1.4013e-45, identity=89.53% 
               

               
               292-479, 1366432 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN533544.1|), 
blast E-value=0, identity=90.05% 
               

               
               292-479, 1371981 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN535922.1|), 
blast E-value=0, identity=90.05% 
               

               
               335-479, 1373517 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN537349.1|), 
blast E-value=1.4013e-45, identity=93.24% 
               

               
               334-479, GL-Cf-12122 GLGC-LIB0001-cf Canis familiaris Normalized Mixed 
(gb|DN755326.1|), blast E-value=0, identity=93.24%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               29-523, gnl|bosTau2|chr19 (34306553-34306067)
               

               
               29-523, gnl|Hg17|chr17 (35766909-35767409)
               

               
               29-523, gnl|Mm7|chr11 (99083531-99083966)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-523, gnl|bosTau2|chr19 (34306553-34306067)
               

               
               29-523, gnl|Hg17|chr17 (35766909-35767409)
               

               
               29-523, gnl|Mm7|chr11 (99083531-99083966)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	292-479, 63241 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|AW484958.1\|), blast E-value=0, identity=90.05%
	292-479, UMC-bend_0A01-011-a01 Day 5 Uterus bend Bos taurus cDNA 3', mRNA (gb\|CK779244.1\|), blast E-value=1.4013e-45, identity=89.53%
	292-479, 1366432 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN533544.1\|), blast E-value=0, identity=90.05%
	292-479, 1371981 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN535922.1\|), blast E-value=0, identity=90.05%
	335-479, 1373517 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN537349.1\|), blast E-value=1.4013e-45, identity=93.24%
	334-479, GL-Cf-12122 GLGC-LIB0001-cf Canis familiaris Normalized Mixed (gb\|DN755326.1\|), blast E-value=0, identity=93.24%

	29-523, gnl\|bosTau2\|chr19 (34306553-34306067)
	29-523, gnl\|Hg17\|chr17 (35766909-35767409)
	29-523, gnl\|Mm7\|chr11 (99083531-99083966)