Non-Coding RNA Search

reli1121b_m21.y1

Sequence:


               
               CTGAGATCCTGGAGGGCCTACAGTTCAACCTCACTGAGAAAGCAGAGGCAGAGATCCACG
AAGGCTTCCAGCATCTTCTCCACACCCTCAACCAGCCAGACAACCAGCTGCAACTGACCA
CCGGCAACGGCCTGTTCATTGACAAGAAGGCCAAGCTGGTGCCCAAGTTTTTGGAGGATG
TCAAGAACCTCTACCATTCCGAAGCCTTCTCCATCAACTTCAGGGACACCGAAGAGGCCA
AGAAATGCATCAACGATTACGTAGAAAAGGGCTCCCAGGGAAAAATTGTGGATTTGGTAG
ATGAGCTTGACAAAGACACCGTATTTGCTCTGGTGAACTACATATTCTTTAAAGGCAAAT
GGGAGAAGCCCTTCGAGGTGGAGCAAACCACAGAGGAGGACTTCCACGTGGACGAGGAGA
CCACAGTCAAGGTGCCCATGATGAACCGCCTGGGCATGTTCGACCTCCACCACTGTGACA
AGCTCTCCAGCTGGGTGCTGCTGATGGACTACGTGGGCAACGCCACCGCCTTCTTCATCC
TGCCCGACCAAGGGAAACTGCACCAGCTGGAGGACATGCTCACCAAGGAAATCCTCGCCA
AGTTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAGATCCTGGAGGGCCTACAGTTCAACCTCACTGAGAAAGCAGAGGCAGAGATCCACG
AAGGCTTCCAGCATCTTCTCCACACCCTCAACCAGCCAGACAACCAGCTGCAACTGACCA
CCGGCAACGGCCTGTTCATTGACAAGAAGGCCAAGCTGGTGCCCAAGTTTTTGGAGGATG
TCAAGAACCTCTACCATTCCGAAGCCTTCTCCATCAACTTCAGGGACACCGAAGAGGCCA
AGAAATGCATCAACGATTACGTAGAAAAGGGCTCCCAGGGAAAAATTGTGGATTTGGTAG
ATGAGCTTGACAAAGACACCGTATTTGCTCTGGTGAACTACATATTCTTTAAAGGCAAAT
GGGAGAAGCCCTTCGAGGTGGAGCAAACCACAGAGGAGGACTTCCACGTGGACGAGGAGA
CCACAGTCAAGGTGCCCATGATGAACCGCCTGGGCATGTTCGACCTCCACCACTGTGACA
AGCTCTCCAGCTGGGTGCTGCTGATGGACTACGTGGGCAACGCCACCGCCTTCTTCATCC
TGCCCGACCAAGGGAAACTGCACCAGCTGGAGGACATGCTCACCAAGGAAATCCTCGCCA
AGTTCCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2116650|dbj|BAA20264.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2116650|dbj|BAA20264.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-240, + strand, RNAz p=0.864389

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, + strand, RNAz p=0.864389

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-358, gnl|bosTau2|chr21 (38962418-38962061)
               

               
               1-358, gnl|Hg17|chr14 (93919035-93918678)
               

               
               1-358, gnl|Mm7|chr12 (101393239-101392882)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-358, gnl|bosTau2|chr21 (38962418-38962061)
               

               
               1-358, gnl|Hg17|chr14 (93919035-93918678)
               

               
               1-358, gnl|Mm7|chr12 (101393239-101392882)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eli (0.151814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)

	1-358, gnl\|bosTau2\|chr21 (38962418-38962061)
	1-358, gnl\|Hg17\|chr14 (93919035-93918678)
	1-358, gnl\|Mm7\|chr12 (101393239-101392882)