Non-Coding RNA Search

relu1303b_h12.y1

Sequence:


               
               GAGATCTGACGTATCTGGACTCTGCATTTCTCCAACAGAGAGATCTTGAAAAGGACTGAC
CGGTTCTTGCAGTTGGAAACAATGGCCCACGGTTCAGTGACATTCAGGGATGTGGCCATA
GACTTCTCCCAGGAAGAATGGGAATTCCTGGATGCAGCTCAGAGGGACTTATATAGGGAT
GTCATGTGGGAGAATTACAGCAACTTCATCTCACTAGCAGGACCTTCCATTTCTAAACCA
GATGTCATAACCTTATTGGATGAAGGGAAGGAGCCCTGGATGGTTGTAAGGGAAGGGACA
AGACGACACCACCCTGGCTTTTTCTGGAGGCTTTCCTACCAACATCTCAGAAGTGCTGCC
CGCCTTCTCACAAGCCAGCTGGGTGACCTCCTGCCATGGCCTTCCCCATCTGAGTCACCA
TTACTCACCTGGACACCATTCTTTCATCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGATCTGACGTATCTGGACTCTGCATTTCTCCAACAGAGAGATCTTGAAAAGGACTGAC
CGGTTCTTGCAGTTGGAAACAATGGCCCACGGTTCAGTGACATTCAGGGATGTGGCCATA
GACTTCTCCCAGGAAGAATGGGAATTCCTGGATGCAGCTCAGAGGGACTTATATAGGGAT
GTCATGTGGGAGAATTACAGCAACTTCATCTCACTAGCAGGACCTTCCATTTCTAAACCA
GATGTCATAACCTTATTGGATGAAGGGAAGGAGCCCTGGATGGTTGTAAGGGAAGGGACA
AGACGACACCACCCTGGCTTTTTCTGGAGGCTTTCCTACCAACATCTCAGAAGTGCTGCC
CGCCTTCTCACAAGCCAGCTGGGTGACCTCCTGCCATGGCCTTCCCCATCTGAGTCACCA
TTACTCACCTGGACACCATTCTTTCATCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47077126|dbj|BAD18488.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47077126|dbj|BAD18488.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               333-450, - strand, RNAz p=0.723083

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               333-450, - strand, RNAz p=0.723083

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               52-303, gnl|bosTau2|chr12 (3769180-3769429)
               

               
               52-303, gnl|Mm7|chr6 (36888346-36888598)
               


               
               316-450, gnl|bosTau2|chr18 (42964765-42964897)
               

               
               316-450, gnl|Hg17|chr19 (42174697-42174567)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               52-303, gnl|bosTau2|chr12 (3769180-3769429)
               

               
               52-303, gnl|Mm7|chr6 (36888346-36888598)
               


               
               316-450, gnl|bosTau2|chr18 (42964765-42964897)
               

               
               316-450, gnl|Hg17|chr19 (42174697-42174567)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               elu (0.385356)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)

	52-303, gnl\|bosTau2\|chr12 (3769180-3769429)
	52-303, gnl\|Mm7\|chr6 (36888346-36888598)

	316-450, gnl\|bosTau2\|chr18 (42964765-42964897)
	316-450, gnl\|Hg17\|chr19 (42174697-42174567)