Non-Coding RNA Search

relu1308b_e11.y1

Sequence:


               
               GAATAGGGAGTGTGCTGACCTATATATTCATGATAGATGTTTCTTTGCCAAACACTGCAC
CAACAGCATCCCCTCGTGTCCCTGAGTTTACTGCTCGAATTCTAGAGAAATTGAAACCCC
TCATGGATGTGGATGAAGAAATTCAGAACCATGTTATGGAAGAAAATGGAATTGGTGAAG
AAGATGAACGAACCCAGGGCATTAAACTCTTAAAAACTATATTAAAATGGTTGATGGCGA
GTGTAGGAAGGTCCTTCTCTACAGCAGTCACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATAGGGAGTGTGCTGACCTATATATTCATGATAGATGTTTCTTTGCCAAACACTGCAC
CAACAGCATCCCCTCGTGTCCCTGAGTTTACTGCTCGAATTCTAGAGAAATTGAAACCCC
TCATGGATGTGGATGAAGAAATTCAGAACCATGTTATGGAAGAAAATGGAATTGGTGAAG
AAGATGAACGAACCCAGGGCATTAAACTCTTAAAAACTATATTAAAATGGTTGATGGCGA
GTGTAGGAAGGTCCTTCTCTACAGCAGTCACAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56206694|emb|CAI24533.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56206694|emb|CAI24533.1|

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               9-219, gnl|bosTau2|chr11 (25683810-25683600)
               

               
               9-219, gnl|canFam2|chr10 (58039706-58039917)
               

               
               9-219, gnl|danRer3|chr13 (38375524-38375319)
               

               
               9-219, gnl|echTel1|scaffold_300155 (9908-10119)
               

               
               9-219, gnl|fr1|chrUn (186558961-186558756)
               

               
               9-219, gnl|galGal2|chr3 (2905118-2904907)
               

               
               9-219, gnl|hg17|chr2 (54026036-54026247)
               

               
               9-219, gnl|Hg17|chr2 (54026257-54026047)
               

               
               9-219, gnl|loxAfr1|scaffold_6083 (17919-17708)
               

               
               9-219, gnl|mm7|chr11 (30805404-30805193)
               

               
               9-219, gnl|Mm7|chr11 (30805181-30805391)
               

               
               9-219, gnl|monDom2|scaffold_1 (16458610-16458821)
               

               
               9-219, gnl|oryCun1|scaffold_198299 (78864-78653)
               

               
               9-219, gnl|panTro1|chr12 (56147132-56147343)
               

               
               9-219, gnl|rheMac2|chr13 (54165507-54165718)
               

               
               9-219, gnl|rn3|chr14 (111999746-111999541)
               

               
               9-219, gnl|tetNig1|chr17 (3729298-3729503)
               

               
               9-219, gnl|xenTro1|scaffold_234 (1421789-1421580)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-219, gnl|bosTau2|chr11 (25683810-25683600)
               

               
               9-219, gnl|canFam2|chr10 (58039706-58039917)
               

               
               9-219, gnl|danRer3|chr13 (38375524-38375319)
               

               
               9-219, gnl|echTel1|scaffold_300155 (9908-10119)
               

               
               9-219, gnl|fr1|chrUn (186558961-186558756)
               

               
               9-219, gnl|galGal2|chr3 (2905118-2904907)
               

               
               9-219, gnl|hg17|chr2 (54026036-54026247)
               

               
               9-219, gnl|Hg17|chr2 (54026257-54026047)
               

               
               9-219, gnl|loxAfr1|scaffold_6083 (17919-17708)
               

               
               9-219, gnl|mm7|chr11 (30805404-30805193)
               

               
               9-219, gnl|Mm7|chr11 (30805181-30805391)
               

               
               9-219, gnl|monDom2|scaffold_1 (16458610-16458821)
               

               
               9-219, gnl|oryCun1|scaffold_198299 (78864-78653)
               

               
               9-219, gnl|panTro1|chr12 (56147132-56147343)
               

               
               9-219, gnl|rheMac2|chr13 (54165507-54165718)
               

               
               9-219, gnl|rn3|chr14 (111999746-111999541)
               

               
               9-219, gnl|tetNig1|chr17 (3729298-3729503)
               

               
               9-219, gnl|xenTro1|scaffold_234 (1421789-1421580)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               elu (0.385356)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)

	9-219, gnl\|bosTau2\|chr11 (25683810-25683600)
	9-219, gnl\|canFam2\|chr10 (58039706-58039917)
	9-219, gnl\|danRer3\|chr13 (38375524-38375319)
	9-219, gnl\|echTel1\|scaffold_300155 (9908-10119)
	9-219, gnl\|fr1\|chrUn (186558961-186558756)
	9-219, gnl\|galGal2\|chr3 (2905118-2904907)
	9-219, gnl\|hg17\|chr2 (54026036-54026247)
	9-219, gnl\|Hg17\|chr2 (54026257-54026047)
	9-219, gnl\|loxAfr1\|scaffold_6083 (17919-17708)
	9-219, gnl\|mm7\|chr11 (30805404-30805193)
	9-219, gnl\|Mm7\|chr11 (30805181-30805391)
	9-219, gnl\|monDom2\|scaffold_1 (16458610-16458821)
	9-219, gnl\|oryCun1\|scaffold_198299 (78864-78653)
	9-219, gnl\|panTro1\|chr12 (56147132-56147343)
	9-219, gnl\|rheMac2\|chr13 (54165507-54165718)
	9-219, gnl\|rn3\|chr14 (111999746-111999541)
	9-219, gnl\|tetNig1\|chr17 (3729298-3729503)
	9-219, gnl\|xenTro1\|scaffold_234 (1421789-1421580)