Non-Coding RNA Search

relu1319b_h20.y1

Sequence:


               
               CACAGACTATAGAAGATGAAACCTACCATGATATCAATCGGGAACACGTCAGCTTATTCC
CTCTGTTTAAAAACAAGGTGGAAGGTCAGGAGCCTGGAGAAAATGCGACCCTTAGTTATG
ATCAGAACGATGGCTTTTATTTCGAATATTACGAAGACGCTGGAGCGAATAACTTTTTGC
ATGAGATCCATGATCCTCAGCATTTAGAAAATGCAGAAACTTCACTGTCCAAGCATAGCT
CTGTTTTTCATTGGACGGATTTGTCGCTGGAGAAGAAGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAGACTATAGAAGATGAAACCTACCATGATATCAATCGGGAACACGTCAGCTTATTCC
CTCTGTTTAAAAACAAGGTGGAAGGTCAGGAGCCTGGAGAAAATGCGACCCTTAGTTATG
ATCAGAACGATGGCTTTTATTTCGAATATTACGAAGACGCTGGAGCGAATAACTTTTTGC
ATGAGATCCATGATCCTCAGCATTTAGAAAATGCAGAAACTTCACTGTCCAAGCATAGCT
CTGTTTTTCATTGGACGGATTTGTCGCTGGAGAAGAAGTCA

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-280, gnl|bosTau2|chr3 (43361951-43362230)
               

               
               1-280, gnl|canFam2|chr6 (60830447-60829976)
               

               
               1-280, gnl|danRer3|chrUn (20616687-20616240)
               

               
               1-280, gnl|dasNov1|scaffold_4326 (43247-43715)
               

               
               1-280, gnl|galGal2|chr8 (14994347-14993884)
               

               
               1-280, gnl|hg17|chr1 (91116041-91116512)
               

               
               1-280, gnl|Hg17|chr1 (91116320-91116041)
               

               
               1-280, gnl|loxAfr1|scaffold_11586 (42793-43301)
               

               
               1-280, gnl|mm7|chr5 (105812815-105813280)
               

               
               1-280, gnl|Mm7|chr5 (105813094-105812815)
               

               
               1-280, gnl|monDom2|scaffold_87 (2654369-2653904)
               

               
               1-280, gnl|oryCun1|scaffold_81161 (12215-12671)
               

               
               1-280, gnl|panTro1|chr1 (89891218-89891689)
               

               
               1-280, gnl|rheMac2|chr1 (93644871-93645342)
               

               
               1-280, gnl|rn3|chr14 (3701726-3701264)
               

               
               1-280, gnl|xenTro1|scaffold_652 (76083-75648)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-280, gnl|bosTau2|chr3 (43361951-43362230)
               

               
               1-280, gnl|canFam2|chr6 (60830447-60829976)
               

               
               1-280, gnl|danRer3|chrUn (20616687-20616240)
               

               
               1-280, gnl|dasNov1|scaffold_4326 (43247-43715)
               

               
               1-280, gnl|galGal2|chr8 (14994347-14993884)
               

               
               1-280, gnl|hg17|chr1 (91116041-91116512)
               

               
               1-280, gnl|Hg17|chr1 (91116320-91116041)
               

               
               1-280, gnl|loxAfr1|scaffold_11586 (42793-43301)
               

               
               1-280, gnl|mm7|chr5 (105812815-105813280)
               

               
               1-280, gnl|Mm7|chr5 (105813094-105812815)
               

               
               1-280, gnl|monDom2|scaffold_87 (2654369-2653904)
               

               
               1-280, gnl|oryCun1|scaffold_81161 (12215-12671)
               

               
               1-280, gnl|panTro1|chr1 (89891218-89891689)
               

               
               1-280, gnl|rheMac2|chr1 (93644871-93645342)
               

               
               1-280, gnl|rn3|chr14 (3701726-3701264)
               

               
               1-280, gnl|xenTro1|scaffold_652 (76083-75648)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               elu (0.385356)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)

	1-280, gnl\|bosTau2\|chr3 (43361951-43362230)
	1-280, gnl\|canFam2\|chr6 (60830447-60829976)
	1-280, gnl\|danRer3\|chrUn (20616687-20616240)
	1-280, gnl\|dasNov1\|scaffold_4326 (43247-43715)
	1-280, gnl\|galGal2\|chr8 (14994347-14993884)
	1-280, gnl\|hg17\|chr1 (91116041-91116512)
	1-280, gnl\|Hg17\|chr1 (91116320-91116041)
	1-280, gnl\|loxAfr1\|scaffold_11586 (42793-43301)
	1-280, gnl\|mm7\|chr5 (105812815-105813280)
	1-280, gnl\|Mm7\|chr5 (105813094-105812815)
	1-280, gnl\|monDom2\|scaffold_87 (2654369-2653904)
	1-280, gnl\|oryCun1\|scaffold_81161 (12215-12671)
	1-280, gnl\|panTro1\|chr1 (89891218-89891689)
	1-280, gnl\|rheMac2\|chr1 (93644871-93645342)
	1-280, gnl\|rn3\|chr14 (3701726-3701264)
	1-280, gnl\|xenTro1\|scaffold_652 (76083-75648)