Non-Coding RNA Search

relu1332c_e19.y1

Sequence:


               
               CAAGAATCACAGTTTAATAATCTAACCTGAAAACTAATAAAGAGAATCCTGACTGATGAG
GAATCTGAAGGATTTTATTTACAGATACCTCAAGGATTCAAAATAAAGGGAAGAAGAAAT
CACAGCAAAGAACCACCATCTTGTTCAGGATTGCTTGATTGGGTGCAAGGAGAAATGGCC
TGAGTGCGGCAGTTCAGGGCAAGATCTTTGCTGGCTTCTCATGACAAAATGGACTCTGCT
TTGACATCACCCCTTCCCACCATATTACTCATAATAACATTTTAGGGGGAAAGGGGGGTG
GGGAATGTTTAAAAAGAAAGTCTTTGATTTAGTTTTGTAGTATTGTAAAGATACTGCTGA
CCTGTGCTTCATTTTTAACTGTGTAAACTTTTTTTTAACAAAATGTATCATTCGATAAAG
TGAATTTTAAAAAAGTTACATAACTCTTCATTTTTTATTTCTAAATTGTAGGTTTTTTTA
AGCCGTAGAACTGTTATCTGTAATATCTTGCTGTAGAAATGTCAAATAATTTGAAAATTT
GCACATTTTTGTGCAATACTCTTAATCTACAGTATCGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGAATCACAGTTTAATAATCTAACCTGAAAACTAATAAAGAGAATCCTGACTGATGAG
GAATCTGAAGGATTTTATTTACAGATACCTCAAGGATTCAAAATAAAGGGAAGAAGAAAT
CACAGCAAAGAACCACCATCTTGTTCAGGATTGCTTGATTGGGTGCAAGGAGAAATGGCC
TGAGTGCGGCAGTTCAGGGCAAGATCTTTGCTGGCTTCTCATGACAAAATGGACTCTGCT
TTGACATCACCCCTTCCCACCATATTACTCATAATAACATTTTAGGGGGAAAGGGGGGTG
GGGAATGTTTAAAAAGAAAGTCTTTGATTTAGTTTTGTAGTATTGTAAAGATACTGCTGA
CCTGTGCTTCATTTTTAACTGTGTAAACTTTTTTTTAACAAAATGTATCATTCGATAAAG
TGAATTTTAAAAAAGTTACATAACTCTTCATTTTTTATTTCTAAATTGTAGGTTTTTTTA
AGCCGTAGAACTGTTATCTGTAATATCTTGCTGTAGAAATGTCAAATAATTTGAAAATTT
GCACATTTTTGTGCAATACTCTTAATCTACAGTATCGGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-158, - strand, RNAz p=0.995077
               

               
               461-579, - strand, RNAz p=0.963771

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-158, - strand, RNAz p=0.995077
               

               
               461-579, - strand, RNAz p=0.963771

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               1-132, - strand, RNAmicro p=0.982921

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1-132, - strand, RNAmicro p=0.982921

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               7-158, DA364782 BRSTN2 Homo sapiens cDNA clone BRSTN2012195 5', mRNA 
(dbj|DA364782.1|), blast E-value=0, identity=96.71% 
               

               
               7-158, DA752667 NT2RP7 Homo sapiens cDNA clone NT2RP7018744 5', mRNA 
(dbj|DA752667.1|), blast E-value=0, identity=96.71% 
               

               
               7-158, DA757663 NT2RP8 Homo sapiens cDNA clone NT2RP8004946 5', mRNA 
(dbj|DA757663.1|), blast E-value=0, identity=96.71% 
               

               
               7-158, DA810961 OCBBF3 Homo sapiens cDNA clone OCBBF3027738 5', mRNA 
(dbj|DA810961.1|), blast E-value=0, identity=96.71% 
               

               
               7-158, DB368923 NT2RP3 Homo sapiens cDNA clone NT2RP3003443 3', mRNA 
(dbj|DB368923.1|), blast E-value=0, identity=96.71% 
               

               
               7-158, DB369383 NT2RP3 Homo sapiens cDNA clone NT2RP3004322 3', mRNA 
(dbj|DB369383.1|), blast E-value=0, identity=96.71%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               7-158, DA364782 BRSTN2 Homo sapiens cDNA clone BRSTN2012195 5', mRNA 
(dbj|DA364782.1|), blast E-value=0, identity=96.71% 
               

               
               7-158, DA752667 NT2RP7 Homo sapiens cDNA clone NT2RP7018744 5', mRNA 
(dbj|DA752667.1|), blast E-value=0, identity=96.71% 
               

               
               7-158, DA757663 NT2RP8 Homo sapiens cDNA clone NT2RP8004946 5', mRNA 
(dbj|DA757663.1|), blast E-value=0, identity=96.71% 
               

               
               7-158, DA810961 OCBBF3 Homo sapiens cDNA clone OCBBF3027738 5', mRNA 
(dbj|DA810961.1|), blast E-value=0, identity=96.71% 
               

               
               7-158, DB368923 NT2RP3 Homo sapiens cDNA clone NT2RP3003443 3', mRNA 
(dbj|DB368923.1|), blast E-value=0, identity=96.71% 
               

               
               7-158, DB369383 NT2RP3 Homo sapiens cDNA clone NT2RP3004322 3', mRNA 
(dbj|DB369383.1|), blast E-value=0, identity=96.71%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-579, gnl|bosTau2|chr8 (16178797-16179374)
               

               
               1-579, gnl|Hg17|chr9 (8307706-8307127)
               

               
               1-579, gnl|Mm7|chr4 (75348486-75347912)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-579, gnl|bosTau2|chr8 (16178797-16179374)
               

               
               1-579, gnl|Hg17|chr9 (8307706-8307127)
               

               
               1-579, gnl|Mm7|chr4 (75348486-75347912)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               elu (0.385356)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)

	1-158, - strand, RNAz p=0.995077
	461-579, - strand, RNAz p=0.963771

	7-158, DA364782 BRSTN2 Homo sapiens cDNA clone BRSTN2012195 5', mRNA (dbj\|DA364782.1\|), blast E-value=0, identity=96.71%
	7-158, DA752667 NT2RP7 Homo sapiens cDNA clone NT2RP7018744 5', mRNA (dbj\|DA752667.1\|), blast E-value=0, identity=96.71%
	7-158, DA757663 NT2RP8 Homo sapiens cDNA clone NT2RP8004946 5', mRNA (dbj\|DA757663.1\|), blast E-value=0, identity=96.71%
	7-158, DA810961 OCBBF3 Homo sapiens cDNA clone OCBBF3027738 5', mRNA (dbj\|DA810961.1\|), blast E-value=0, identity=96.71%
	7-158, DB368923 NT2RP3 Homo sapiens cDNA clone NT2RP3003443 3', mRNA (dbj\|DB368923.1\|), blast E-value=0, identity=96.71%
	7-158, DB369383 NT2RP3 Homo sapiens cDNA clone NT2RP3004322 3', mRNA (dbj\|DB369383.1\|), blast E-value=0, identity=96.71%

	1-579, gnl\|bosTau2\|chr8 (16178797-16179374)
	1-579, gnl\|Hg17\|chr9 (8307706-8307127)
	1-579, gnl\|Mm7\|chr4 (75348486-75347912)