Non-Coding RNA Search

reru01c_h18.y1

Sequence:


               
               TACGACGAGGAGGAGGTGGATTACGAGGAGTCGGACAGCGATGAGTCCTGGACCACAGAG
AGCGCCATCAGCTCCGAAGCCATCCTCAGCTCCATGTGCATGAACGGAGGGGAGGAGAAG
CCTTTCGCCTGCCCGGTTCCTGGATGCAAAAAGAGATACAAGAATGTGAATGGCATAAAG
TACCATGCTAAGAATGGTCACAGAACACAGATTCGTGTCCGCAAACCATTCAAATGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACGACGAGGAGGAGGTGGATTACGAGGAGTCGGACAGCGATGAGTCCTGGACCACAGAG
AGCGCCATCAGCTCCGAAGCCATCCTCAGCTCCATGTGCATGAACGGAGGGGAGGAGAAG
CCTTTCGCCTGCCCGGTTCCTGGATGCAAAAAGAGATACAAGAATGTGAATGGCATAAAG
TACCATGCTAAGAATGGTCACAGAACACAGATTCGTGTCCGCAAACCATTCAAATGCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q69YN3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q69YN3_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, + strand, RNAz p=0.581316

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.581316

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-162, gnl|bosTau2|chr4 (39592139-39592300)
               

               
               1-162, gnl|canFam2|chr14 (43905079-43905299)
               

               
               1-162, gnl|danRer3|chr19 (21484846-21484664)
               

               
               1-162, gnl|dasNov1|scaffold_96272 (4255-4036)
               

               
               1-162, gnl|echTel1|scaffold_70286 (2519-2742)
               

               
               1-162, gnl|fr1|chrUn (24401215-24401404)
               

               
               1-162, gnl|galGal2|chr2 (32151345-32151573)
               

               
               1-162, gnl|hg17|chr7 (27653545-27653764)
               

               
               1-162, gnl|Hg17|chr7 (27653718-27653557)
               

               
               1-162, gnl|loxAfr1|scaffold_11343 (38045-38263)
               

               
               1-162, gnl|mm7|chr6 (52740892-52741114)
               

               
               1-162, gnl|Mm7|chr6 (52741066-52740905)
               

               
               1-162, gnl|monDom2|scaffold_57 (202489-202279)
               

               
               1-162, gnl|oryCun1|scaffold_78308 (648-867)
               

               
               1-162, gnl|panTro1|chr6 (28784516-28784735)
               

               
               1-162, gnl|rheMac2|chr3 (98381571-98381352)
               

               
               1-162, gnl|rn3|chr4 (81379280-81379504)
               

               
               1-162, gnl|tetNig1|chr8 (6588040-6587860)
               

               
               1-162, gnl|xenTro1|scaffold_29 (2337218-2337416)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-162, gnl|bosTau2|chr4 (39592139-39592300)
               

               
               1-162, gnl|canFam2|chr14 (43905079-43905299)
               

               
               1-162, gnl|danRer3|chr19 (21484846-21484664)
               

               
               1-162, gnl|dasNov1|scaffold_96272 (4255-4036)
               

               
               1-162, gnl|echTel1|scaffold_70286 (2519-2742)
               

               
               1-162, gnl|fr1|chrUn (24401215-24401404)
               

               
               1-162, gnl|galGal2|chr2 (32151345-32151573)
               

               
               1-162, gnl|hg17|chr7 (27653545-27653764)
               

               
               1-162, gnl|Hg17|chr7 (27653718-27653557)
               

               
               1-162, gnl|loxAfr1|scaffold_11343 (38045-38263)
               

               
               1-162, gnl|mm7|chr6 (52740892-52741114)
               

               
               1-162, gnl|Mm7|chr6 (52741066-52740905)
               

               
               1-162, gnl|monDom2|scaffold_57 (202489-202279)
               

               
               1-162, gnl|oryCun1|scaffold_78308 (648-867)
               

               
               1-162, gnl|panTro1|chr6 (28784516-28784735)
               

               
               1-162, gnl|rheMac2|chr3 (98381571-98381352)
               

               
               1-162, gnl|rn3|chr4 (81379280-81379504)
               

               
               1-162, gnl|tetNig1|chr8 (6588040-6587860)
               

               
               1-162, gnl|xenTro1|scaffold_29 (2337218-2337416)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	1-162, gnl\|bosTau2\|chr4 (39592139-39592300)
	1-162, gnl\|canFam2\|chr14 (43905079-43905299)
	1-162, gnl\|danRer3\|chr19 (21484846-21484664)
	1-162, gnl\|dasNov1\|scaffold_96272 (4255-4036)
	1-162, gnl\|echTel1\|scaffold_70286 (2519-2742)
	1-162, gnl\|fr1\|chrUn (24401215-24401404)
	1-162, gnl\|galGal2\|chr2 (32151345-32151573)
	1-162, gnl\|hg17\|chr7 (27653545-27653764)
	1-162, gnl\|Hg17\|chr7 (27653718-27653557)
	1-162, gnl\|loxAfr1\|scaffold_11343 (38045-38263)
	1-162, gnl\|mm7\|chr6 (52740892-52741114)
	1-162, gnl\|Mm7\|chr6 (52741066-52740905)
	1-162, gnl\|monDom2\|scaffold_57 (202489-202279)
	1-162, gnl\|oryCun1\|scaffold_78308 (648-867)
	1-162, gnl\|panTro1\|chr6 (28784516-28784735)
	1-162, gnl\|rheMac2\|chr3 (98381571-98381352)
	1-162, gnl\|rn3\|chr4 (81379280-81379504)
	1-162, gnl\|tetNig1\|chr8 (6588040-6587860)
	1-162, gnl\|xenTro1\|scaffold_29 (2337218-2337416)