Non-Coding RNA Search

reru03c_c20.y1

Sequence:


               
               ATTCGAGAAACCAAGGCGCAGCCATGGTAGATGCGGAGATGGCCGCATTTGGGGAGGCCG
CCCCCTACCTGCGCAAGTCAGAGAAGGAGCGGCTGGAAGCCCAGACCAGGCCTTTCGACC
TCAAGAAGGATGTCTATGTTCCTGATGACAAAGAGGAGTTCGTCAAGGCCAAGATTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCGAGAAACCAAGGCGCAGCCATGGTAGATGCGGAGATGGCCGCATTTGGGGAGGCCG
CCCCCTACCTGCGCAAGTCAGAGAAGGAGCGGCTGGAAGCCCAGACCAGGCCTTTCGACC
TCAAGAAGGATGTCTATGTTCCTGATGACAAAGAGGAGTTCGTCAAGGCCAAGATTTTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6457356|gb|AAF09491.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6457356|gb|AAF09491.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               14-172, + strand, RNAz p=0.976311
               

               
               14-131, + strand, RNAz p=0.963841

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-172, + strand, RNAz p=0.976311
               

               
               14-131, + strand, RNAz p=0.963841

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000257, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000257, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               14-180, gnl|bosTau2|chr10 (14748941-14749107)
               

               
               14-180, gnl|canFam2|chr8 (6683162-6683405)
               

               
               14-180, gnl|danRer3|chr24 (32732103-32732307)
               

               
               14-180, gnl|dasNov1|scaffold_17525 (48462-48699)
               

               
               14-180, gnl|echTel1|scaffold_323511 (6901-7117)
               

               
               14-180, gnl|fr1|chrUn (127055733-127055499)
               

               
               14-180, gnl|galGal2|chr18 (382646-382864)
               

               
               14-180, gnl|hg17|chr14 (22972572-22972803)
               

               
               14-180, gnl|Hg17|chr14 (22972791-22972625)
               

               
               14-180, gnl|loxAfr1|scaffold_121 (6005-5798)
               

               
               14-180, gnl|mm7|chr14 (49859112-49859343)
               

               
               14-180, gnl|Mm7|chr14 (49859331-49859165)
               

               
               14-180, gnl|monDom2|scaffold_12 (26243852-26243621)
               

               
               14-180, gnl|oryCun1|scaffold_207117 (57338-57120)
               

               
               14-180, gnl|panTro1|chr15 (21940474-21940705)
               

               
               14-180, gnl|rheMac2|chr7 (86274328-86274559)
               

               
               14-180, gnl|rn3|chr15 (33110078-33110309)
               

               
               14-180, gnl|tetNig1|chrUn_random (96676318-96676074)
               

               
               14-180, gnl|xenTro1|scaffold_53 (36336-36114)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-180, gnl|bosTau2|chr10 (14748941-14749107)
               

               
               14-180, gnl|canFam2|chr8 (6683162-6683405)
               

               
               14-180, gnl|danRer3|chr24 (32732103-32732307)
               

               
               14-180, gnl|dasNov1|scaffold_17525 (48462-48699)
               

               
               14-180, gnl|echTel1|scaffold_323511 (6901-7117)
               

               
               14-180, gnl|fr1|chrUn (127055733-127055499)
               

               
               14-180, gnl|galGal2|chr18 (382646-382864)
               

               
               14-180, gnl|hg17|chr14 (22972572-22972803)
               

               
               14-180, gnl|Hg17|chr14 (22972791-22972625)
               

               
               14-180, gnl|loxAfr1|scaffold_121 (6005-5798)
               

               
               14-180, gnl|mm7|chr14 (49859112-49859343)
               

               
               14-180, gnl|Mm7|chr14 (49859331-49859165)
               

               
               14-180, gnl|monDom2|scaffold_12 (26243852-26243621)
               

               
               14-180, gnl|oryCun1|scaffold_207117 (57338-57120)
               

               
               14-180, gnl|panTro1|chr15 (21940474-21940705)
               

               
               14-180, gnl|rheMac2|chr7 (86274328-86274559)
               

               
               14-180, gnl|rn3|chr15 (33110078-33110309)
               

               
               14-180, gnl|tetNig1|chrUn_random (96676318-96676074)
               

               
               14-180, gnl|xenTro1|scaffold_53 (36336-36114)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	14-172, + strand, RNAz p=0.976311
	14-131, + strand, RNAz p=0.963841

	14-180, gnl\|bosTau2\|chr10 (14748941-14749107)
	14-180, gnl\|canFam2\|chr8 (6683162-6683405)
	14-180, gnl\|danRer3\|chr24 (32732103-32732307)
	14-180, gnl\|dasNov1\|scaffold_17525 (48462-48699)
	14-180, gnl\|echTel1\|scaffold_323511 (6901-7117)
	14-180, gnl\|fr1\|chrUn (127055733-127055499)
	14-180, gnl\|galGal2\|chr18 (382646-382864)
	14-180, gnl\|hg17\|chr14 (22972572-22972803)
	14-180, gnl\|Hg17\|chr14 (22972791-22972625)
	14-180, gnl\|loxAfr1\|scaffold_121 (6005-5798)
	14-180, gnl\|mm7\|chr14 (49859112-49859343)
	14-180, gnl\|Mm7\|chr14 (49859331-49859165)
	14-180, gnl\|monDom2\|scaffold_12 (26243852-26243621)
	14-180, gnl\|oryCun1\|scaffold_207117 (57338-57120)
	14-180, gnl\|panTro1\|chr15 (21940474-21940705)
	14-180, gnl\|rheMac2\|chr7 (86274328-86274559)
	14-180, gnl\|rn3\|chr15 (33110078-33110309)
	14-180, gnl\|tetNig1\|chrUn_random (96676318-96676074)
	14-180, gnl\|xenTro1\|scaffold_53 (36336-36114)