Non-Coding RNA Search

reru03c_h20.y1

Sequence:


               
               ATCTGGTTCCAGAACCGGCGCATGAAGTACAAGAAGGACCAGAAGGCCAAGGGCATCCTG
CACTCGCCGGCGGGTCAGTCCCCAGAACGCAGCCCGCCGCTCGGCGGCGCCGCGGGCCGC
GTGGCCTACTCAGGCCAGCTGCCACCCGTGCCCGGCCTAGCCTACGACGCGCCCTCGCCG
CCCGCTTTCGCCAAATCTCAGCCCAACATGTACGGCCTGGCCGCTTACACGGCGCCGCTC
AGCAGCTGCCTGCCGCAGCAGAAGCGCTACGCGGCGCCGGAGTTCGAGCCCCACCCCATG
GCGAGCAACGGCGGCGGCTTTGCCAGCGCCAACCTGCAGGGCAGCCCGGTGTACGTGGGC
GGCAACTTCGTCGACTCCATGGCGCCGGCGTCCGGGCCCGTCTTCAACCTGGGCCACCTC
TCGCACCCATCTTCAGCCAGCGTGGACTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTGGTTCCAGAACCGGCGCATGAAGTACAAGAAGGACCAGAAGGCCAAGGGCATCCTG
CACTCGCCGGCGGGTCAGTCCCCAGAACGCAGCCCGCCGCTCGGCGGCGCCGCGGGCCGC
GTGGCCTACTCAGGCCAGCTGCCACCCGTGCCCGGCCTAGCCTACGACGCGCCCTCGCCG
CCCGCTTTCGCCAAATCTCAGCCCAACATGTACGGCCTGGCCGCTTACACGGCGCCGCTC
AGCAGCTGCCTGCCGCAGCAGAAGCGCTACGCGGCGCCGGAGTTCGAGCCCCACCCCATG
GCGAGCAACGGCGGCGGCTTTGCCAGCGCCAACCTGCAGGGCAGCCCGGTGTACGTGGGC
GGCAACTTCGTCGACTCCATGGCGCCGGCGTCCGGGCCCGTCTTCAACCTGGGCCACCTC
TCGCACCCATCTTCAGCCAGCGTGGACTACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28629673|gb|AAO43042.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28629673|gb|AAO43042.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               311-451, - strand, RNAz p=0.996382

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-451, - strand, RNAz p=0.996382

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-451, gnl|bosTau2|chr19 (30606911-30606452)
               

               
               1-451, gnl|canFam2|chr9 (28139432-28139004)
               

               
               1-451, gnl|danRer3|chr3 (18017309-18016887)
               

               
               1-451, gnl|dasNov1|scaffold_4770 (27868-27407)
               

               
               1-451, gnl|echTel1|scaffold_294820 (25197-25622)
               

               
               1-451, gnl|fr1|chrUn (164065185-164065637)
               

               
               1-451, gnl|galGal2|chrUn (130738300-130737875)
               

               
               1-451, gnl|Hg17|chr17 (43983291-43982832)
               

               
               1-451, gnl|hg17|chr2 (75736902-75737296)
               

               
               1-451, gnl|loxAfr1|scaffold_6797 (41410-40985)
               

               
               1-451, gnl|mm7|chr11 (96454735-96455163)
               

               
               1-451, gnl|Mm7|chr11 (96454845-96455304)
               

               
               1-451, gnl|monDom2|scaffold_18 (45653515-45653946)
               

               
               1-451, gnl|oryCun1|scaffold_200437 (200252-200715)
               

               
               1-451, gnl|panTro1|chr12 (78185686-78186074)
               

               
               1-451, gnl|rheMac2|chr13 (75876424-75876817)
               

               
               1-451, gnl|rn3|chr10 (85092775-85093203)
               

               
               1-451, gnl|tetNig1|chrUn_random (38050617-38050164)
               

               
               1-451, gnl|xenTro1|scaffold_329 (523623-523213)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-451, gnl|bosTau2|chr19 (30606911-30606452)
               

               
               1-451, gnl|canFam2|chr9 (28139432-28139004)
               

               
               1-451, gnl|danRer3|chr3 (18017309-18016887)
               

               
               1-451, gnl|dasNov1|scaffold_4770 (27868-27407)
               

               
               1-451, gnl|echTel1|scaffold_294820 (25197-25622)
               

               
               1-451, gnl|fr1|chrUn (164065185-164065637)
               

               
               1-451, gnl|galGal2|chrUn (130738300-130737875)
               

               
               1-451, gnl|Hg17|chr17 (43983291-43982832)
               

               
               1-451, gnl|hg17|chr2 (75736902-75737296)
               

               
               1-451, gnl|loxAfr1|scaffold_6797 (41410-40985)
               

               
               1-451, gnl|mm7|chr11 (96454735-96455163)
               

               
               1-451, gnl|Mm7|chr11 (96454845-96455304)
               

               
               1-451, gnl|monDom2|scaffold_18 (45653515-45653946)
               

               
               1-451, gnl|oryCun1|scaffold_200437 (200252-200715)
               

               
               1-451, gnl|panTro1|chr12 (78185686-78186074)
               

               
               1-451, gnl|rheMac2|chr13 (75876424-75876817)
               

               
               1-451, gnl|rn3|chr10 (85092775-85093203)
               

               
               1-451, gnl|tetNig1|chrUn_random (38050617-38050164)
               

               
               1-451, gnl|xenTro1|scaffold_329 (523623-523213)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	1-451, gnl\|bosTau2\|chr19 (30606911-30606452)
	1-451, gnl\|canFam2\|chr9 (28139432-28139004)
	1-451, gnl\|danRer3\|chr3 (18017309-18016887)
	1-451, gnl\|dasNov1\|scaffold_4770 (27868-27407)
	1-451, gnl\|echTel1\|scaffold_294820 (25197-25622)
	1-451, gnl\|fr1\|chrUn (164065185-164065637)
	1-451, gnl\|galGal2\|chrUn (130738300-130737875)
	1-451, gnl\|Hg17\|chr17 (43983291-43982832)
	1-451, gnl\|hg17\|chr2 (75736902-75737296)
	1-451, gnl\|loxAfr1\|scaffold_6797 (41410-40985)
	1-451, gnl\|mm7\|chr11 (96454735-96455163)
	1-451, gnl\|Mm7\|chr11 (96454845-96455304)
	1-451, gnl\|monDom2\|scaffold_18 (45653515-45653946)
	1-451, gnl\|oryCun1\|scaffold_200437 (200252-200715)
	1-451, gnl\|panTro1\|chr12 (78185686-78186074)
	1-451, gnl\|rheMac2\|chr13 (75876424-75876817)
	1-451, gnl\|rn3\|chr10 (85092775-85093203)
	1-451, gnl\|tetNig1\|chrUn_random (38050617-38050164)
	1-451, gnl\|xenTro1\|scaffold_329 (523623-523213)