Non-Coding RNA Search

reru06c_k7.y1

Sequence:


               
               GGTGAGATTGGAAAGGATCAGGAAGGAGTAAATTTGGGGGAAAGTCAAGAATTCTGCTTT
GGCTCTGTCACTTTTTGGAGATCTCAGTTTGGCAGCTGGGAATATGAGTCTGAATTTCTG
GAGTGTGTCAGGGCTGGTGATAAGAAGTTGGAAGTTGCTGGTATAGAGATGGTATTTATA
GCCTGGGGATTGGTTGCGCTCACCCAGAGAGAGTGTGTAATAGAGAAGAGAAAATGTCTT
ATCTCACCAAGGGGGAGTCATCTGCAATGGTCACTGGGTAGGCTTTAATTTAGTTTTGAA
AATCATTGGTACCTTTAGGGCTTGTACAAACAAGACGTCTGATCTAGGTTGAAGGACAGT
ATCTTGTAGGTGGGGATCTACTCCCAGGCCCTCACTGAGATGTAGCAAAACATTCATTTA
AAAAAATCAACTTAGGACACTTATCTATTCATATATATATTTATTACAAACCCTCCTGAT
AACACATAACTGTCTTCTTAATGCTTTTCTGGTGCTTCTGCTACCCATCCCTCATGTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGAGATTGGAAAGGATCAGGAAGGAGTAAATTTGGGGGAAAGTCAAGAATTCTGCTTT
GGCTCTGTCACTTTTTGGAGATCTCAGTTTGGCAGCTGGGAATATGAGTCTGAATTTCTG
GAGTGTGTCAGGGCTGGTGATAAGAAGTTGGAAGTTGCTGGTATAGAGATGGTATTTATA
GCCTGGGGATTGGTTGCGCTCACCCAGAGAGAGTGTGTAATAGAGAAGAGAAAATGTCTT
ATCTCACCAAGGGGGAGTCATCTGCAATGGTCACTGGGTAGGCTTTAATTTAGTTTTGAA
AATCATTGGTACCTTTAGGGCTTGTACAAACAAGACGTCTGATCTAGGTTGAAGGACAGT
ATCTTGTAGGTGGGGATCTACTCCCAGGCCCTCACTGAGATGTAGCAAAACATTCATTTA
AAAAAATCAACTTAGGACACTTATCTATTCATATATATATTTATTACAAACCCTCCTGAT
AACACATAACTGTCTTCTTAATGCTTTTCTGGTGCTTCTGCTACCCATCCCTCATGTGAA

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

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               1-540, gnl|bosTau2|chr1 (72848393-72847839)
               

               
               1-540, gnl|canFam2|chr23 (50432768-50433286)
               

               
               1-540, gnl|hg17|chr3 (154178462-154178936)
               

               
               1-540, gnl|Hg17|chr3 (154179035-154178527)
               

               
               1-540, gnl|loxAfr1|scaffold_90891 (3201-3721)
               

               
               1-540, gnl|oryCun1|scaffold_180819 (41172-40658)
               

               
               1-540, gnl|panTro1|chr2 (157389733-157390221)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr1 (72848393-72847839)
               

               
               1-540, gnl|canFam2|chr23 (50432768-50433286)
               

               
               1-540, gnl|hg17|chr3 (154178462-154178936)
               

               
               1-540, gnl|Hg17|chr3 (154179035-154178527)
               

               
               1-540, gnl|loxAfr1|scaffold_90891 (3201-3721)
               

               
               1-540, gnl|oryCun1|scaffold_180819 (41172-40658)
               

               
               1-540, gnl|panTro1|chr2 (157389733-157390221)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	1-540, gnl\|bosTau2\|chr1 (72848393-72847839)
	1-540, gnl\|canFam2\|chr23 (50432768-50433286)
	1-540, gnl\|hg17\|chr3 (154178462-154178936)
	1-540, gnl\|Hg17\|chr3 (154179035-154178527)
	1-540, gnl\|loxAfr1\|scaffold_90891 (3201-3721)
	1-540, gnl\|oryCun1\|scaffold_180819 (41172-40658)
	1-540, gnl\|panTro1\|chr2 (157389733-157390221)