Non-Coding RNA Search

reru08c_a2.y1

Sequence:


               
               AAGGATTTAAAATAAAATGCTGTCATGTAACCCTGTGGAAGGGAGCACATAACCAGCTGT
TAGACATGACAAGTGACTTAGTATATTCGTAATTGGTTTGAAACCAATACACCATACTTC
CTTTCTCCAAACAGCCATCTTTATACTTGGGGGGGGGGGGGGAGAAATCTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGATTTAAAATAAAATGCTGTCATGTAACCCTGTGGAAGGGAGCACATAACCAGCTGT
TAGACATGACAAGTGACTTAGTATATTCGTAATTGGTTTGAAACCAATACACCATACTTC
CTTTCTCCAAACAGCCATCTTTATACTTGGGGGGGGGGGGGGAGAAATCTCTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-111, - strand, RNAz p=0.964241
               

               
               18-154, - strand, RNAz p=0.679681

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-111, - strand, RNAz p=0.964241
               

               
               18-154, - strand, RNAz p=0.679681

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-154, gnl|bosTau2|chr16 (163669-163825)
               

               
               1-154, gnl|canFam2|chr38 (3418059-3418405)
               

               
               1-154, gnl|dasNov1|scaffold_6279 (119670-120024)
               

               
               1-154, gnl|galGal2|chr26 (3709121-3709460)
               

               
               1-154, gnl|hg17|chr1 (200442788-200443135)
               

               
               1-154, gnl|Hg17|chr1 (200442946-200443100)
               

               
               1-154, gnl|loxAfr1|scaffold_16820 (29062-28713)
               

               
               1-154, gnl|mm7|chr1 (133594510-133594126)
               

               
               1-154, gnl|Mm7|chr1 (133594315-133594160)
               

               
               1-154, gnl|monDom2|scaffold_13 (3974174-3974512)
               

               
               1-154, gnl|oryCun1|scaffold_157706 (7857-8226)
               

               
               1-154, gnl|panTro1|chr1 (183376548-183376894)
               

               
               1-154, gnl|rheMac2|chr1 (166685224-166684878)
               

               
               1-154, gnl|rn3|chr13 (46643482-46643078)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-154, gnl|bosTau2|chr16 (163669-163825)
               

               
               1-154, gnl|canFam2|chr38 (3418059-3418405)
               

               
               1-154, gnl|dasNov1|scaffold_6279 (119670-120024)
               

               
               1-154, gnl|galGal2|chr26 (3709121-3709460)
               

               
               1-154, gnl|hg17|chr1 (200442788-200443135)
               

               
               1-154, gnl|Hg17|chr1 (200442946-200443100)
               

               
               1-154, gnl|loxAfr1|scaffold_16820 (29062-28713)
               

               
               1-154, gnl|mm7|chr1 (133594510-133594126)
               

               
               1-154, gnl|Mm7|chr1 (133594315-133594160)
               

               
               1-154, gnl|monDom2|scaffold_13 (3974174-3974512)
               

               
               1-154, gnl|oryCun1|scaffold_157706 (7857-8226)
               

               
               1-154, gnl|panTro1|chr1 (183376548-183376894)
               

               
               1-154, gnl|rheMac2|chr1 (166685224-166684878)
               

               
               1-154, gnl|rn3|chr13 (46643482-46643078)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	1-111, - strand, RNAz p=0.964241
	18-154, - strand, RNAz p=0.679681

	1-154, gnl\|bosTau2\|chr16 (163669-163825)
	1-154, gnl\|canFam2\|chr38 (3418059-3418405)
	1-154, gnl\|dasNov1\|scaffold_6279 (119670-120024)
	1-154, gnl\|galGal2\|chr26 (3709121-3709460)
	1-154, gnl\|hg17\|chr1 (200442788-200443135)
	1-154, gnl\|Hg17\|chr1 (200442946-200443100)
	1-154, gnl\|loxAfr1\|scaffold_16820 (29062-28713)
	1-154, gnl\|mm7\|chr1 (133594510-133594126)
	1-154, gnl\|Mm7\|chr1 (133594315-133594160)
	1-154, gnl\|monDom2\|scaffold_13 (3974174-3974512)
	1-154, gnl\|oryCun1\|scaffold_157706 (7857-8226)
	1-154, gnl\|panTro1\|chr1 (183376548-183376894)
	1-154, gnl\|rheMac2\|chr1 (166685224-166684878)
	1-154, gnl\|rn3\|chr13 (46643482-46643078)