Non-Coding RNA Search

reru10c_b22.y1

Sequence:


               
               CTGGGAAGCTGGCTTCTGCTGATATCGAAACATATCTTCTAGAAAAGTCTAGAGTTACTT
TCCAGTTGAAGGCAGAAAGAAGCTACCATATTTTTTATCAGATCACTTCCAATAAGAAGC
CAGATCTGATTGAAATGCTCCGGATCACCACCAACCCATATGACTACGCTTTCGTCAGTC
AAGGCGAGATCACTGTCCCCAGCATTGATGACCAAGAGGAGCTGATGGCCACTGATAGTG
CCATTGATATCCTGGGCTTTACTCCTGAGGAGAAAGTATCCATCTACAAGCTCACAGGGG
CAGTAATGCATTATGGGAACATGAAATTCAAGCAAAAGCAACGTGAGGAGCAAGCGGAGC
CAGATGGCACAGAAGTTGCTGACAAGGCTGCCTACCTCCAGAGTCTGAACTCTGCTGACC
TGCTCAAAGCCCTCTGCTACCCTAGGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGAAGCTGGCTTCTGCTGATATCGAAACATATCTTCTAGAAAAGTCTAGAGTTACTT
TCCAGTTGAAGGCAGAAAGAAGCTACCATATTTTTTATCAGATCACTTCCAATAAGAAGC
CAGATCTGATTGAAATGCTCCGGATCACCACCAACCCATATGACTACGCTTTCGTCAGTC
AAGGCGAGATCACTGTCCCCAGCATTGATGACCAAGAGGAGCTGATGGCCACTGATAGTG
CCATTGATATCCTGGGCTTTACTCCTGAGGAGAAAGTATCCATCTACAAGCTCACAGGGG
CAGTAATGCATTATGGGAACATGAAATTCAAGCAAAAGCAACGTGAGGAGCAAGCGGAGC
CAGATGGCACAGAAGTTGCTGACAAGGCTGCCTACCTCCAGAGTCTGAACTCTGCTGACC
TGCTCAAAGCCCTCTGCTACCCTAGGGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               257-375, + strand, RNAz p=0.710412

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-375, + strand, RNAz p=0.710412

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               237-375, gnl|bosTau2|chr19 (22491720-22491582)
               

               
               237-375, gnl|canFam2|chr5 (37711433-37711600)
               

               
               237-375, gnl|danRer3|chr5 (27946866-27946713)
               

               
               237-375, gnl|dasNov1|scaffold_2441 (13680-13515)
               

               
               237-375, gnl|echTel1|scaffold_305213 (8296-8466)
               

               
               237-375, gnl|fr1|chrUn (258632123-258632277)
               

               
               237-375, gnl|galGal2|chr18 (352905-353060)
               

               
               237-375, gnl|hg17|chr17 (10257937-10258103)
               

               
               237-375, gnl|Hg17|chr17 (10258082-10257944)
               

               
               237-375, gnl|loxAfr1|scaffold_121 (150608-150442)
               

               
               237-375, gnl|mm7|chr11 (67366596-67366430)
               

               
               237-375, gnl|Mm7|chr11 (67366449-67366587)
               

               
               237-375, gnl|monDom2|scaffold_18 (3115396-3115230)
               

               
               237-375, gnl|oryCun1|scaffold_208583 (30886-30720)
               

               
               237-375, gnl|panTro1|chr19_random (28162281-28162115)
               

               
               237-375, gnl|rheMac2|chr16 (10170702-10170868)
               

               
               237-375, gnl|rn3|chr10 (53993329-53993163)
               

               
               237-375, gnl|tetNig1|chrUn_random (96694571-96694419)
               

               
               237-375, gnl|xenTro1|scaffold_270 (205433-205227)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               237-375, gnl|bosTau2|chr19 (22491720-22491582)
               

               
               237-375, gnl|canFam2|chr5 (37711433-37711600)
               

               
               237-375, gnl|danRer3|chr5 (27946866-27946713)
               

               
               237-375, gnl|dasNov1|scaffold_2441 (13680-13515)
               

               
               237-375, gnl|echTel1|scaffold_305213 (8296-8466)
               

               
               237-375, gnl|fr1|chrUn (258632123-258632277)
               

               
               237-375, gnl|galGal2|chr18 (352905-353060)
               

               
               237-375, gnl|hg17|chr17 (10257937-10258103)
               

               
               237-375, gnl|Hg17|chr17 (10258082-10257944)
               

               
               237-375, gnl|loxAfr1|scaffold_121 (150608-150442)
               

               
               237-375, gnl|mm7|chr11 (67366596-67366430)
               

               
               237-375, gnl|Mm7|chr11 (67366449-67366587)
               

               
               237-375, gnl|monDom2|scaffold_18 (3115396-3115230)
               

               
               237-375, gnl|oryCun1|scaffold_208583 (30886-30720)
               

               
               237-375, gnl|panTro1|chr19_random (28162281-28162115)
               

               
               237-375, gnl|rheMac2|chr16 (10170702-10170868)
               

               
               237-375, gnl|rn3|chr10 (53993329-53993163)
               

               
               237-375, gnl|tetNig1|chrUn_random (96694571-96694419)
               

               
               237-375, gnl|xenTro1|scaffold_270 (205433-205227)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	237-375, gnl\|bosTau2\|chr19 (22491720-22491582)
	237-375, gnl\|canFam2\|chr5 (37711433-37711600)
	237-375, gnl\|danRer3\|chr5 (27946866-27946713)
	237-375, gnl\|dasNov1\|scaffold_2441 (13680-13515)
	237-375, gnl\|echTel1\|scaffold_305213 (8296-8466)
	237-375, gnl\|fr1\|chrUn (258632123-258632277)
	237-375, gnl\|galGal2\|chr18 (352905-353060)
	237-375, gnl\|hg17\|chr17 (10257937-10258103)
	237-375, gnl\|Hg17\|chr17 (10258082-10257944)
	237-375, gnl\|loxAfr1\|scaffold_121 (150608-150442)
	237-375, gnl\|mm7\|chr11 (67366596-67366430)
	237-375, gnl\|Mm7\|chr11 (67366449-67366587)
	237-375, gnl\|monDom2\|scaffold_18 (3115396-3115230)
	237-375, gnl\|oryCun1\|scaffold_208583 (30886-30720)
	237-375, gnl\|panTro1\|chr19_random (28162281-28162115)
	237-375, gnl\|rheMac2\|chr16 (10170702-10170868)
	237-375, gnl\|rn3\|chr10 (53993329-53993163)
	237-375, gnl\|tetNig1\|chrUn_random (96694571-96694419)
	237-375, gnl\|xenTro1\|scaffold_270 (205433-205227)