Non-Coding RNA Search

reru10c_p2.y1

Sequence:


               
               AGTATGGGAATTCACATCTATATCATAGTCAAGGGAAAGGACCATATAAACATGACCGAG
TTGCCCACCAGAGTCGAGCTTCTGCACAAACATTAAGTTCAAGTAAATGCCAGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTATGGGAATTCACATCTATATCATAGTCAAGGGAAAGGACCATATAAACATGACCGAG
TTGCCCACCAGAGTCGAGCTTCTGCACAAACATTAAGTTCAAGTAAATGCCAGATT

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-116, gnl|bosTau2|chr6 (3047172-3047287)
               

               
               1-116, gnl|canFam2|chr32 (41119895-41120100)
               

               
               1-116, gnl|danRer3|chrNA (163262496-163262692)
               

               
               1-116, gnl|dasNov1|scaffold_61813 (3021-3226)
               

               
               1-116, gnl|echTel1|scaffold_277317 (48044-48249)
               

               
               1-116, gnl|fr1|chrUn (136186731-136186945)
               

               
               1-116, gnl|galGal2|chr4 (55271110-55270905)
               

               
               1-116, gnl|hg17|chr4 (120550078-120550283)
               

               
               1-116, gnl|Hg17|chr4 (120550120-120550235)
               

               
               1-116, gnl|loxAfr1|scaffold_2512 (80905-81110)
               

               
               1-116, gnl|mm7|chr3 (122788463-122788255)
               

               
               1-116, gnl|Mm7|chr3 (122788419-122788301)
               

               
               1-116, gnl|monDom2|scaffold_32 (8046964-8046753)
               

               
               1-116, gnl|oryCun1|scaffold_214279 (79865-80067)
               

               
               1-116, gnl|panTro1|chr3 (137156547-137156752)
               

               
               1-116, gnl|rheMac2|chr5 (111853545-111853750)
               

               
               1-116, gnl|rn3|chr2 (219611619-219611411)
               

               
               1-116, gnl|xenTro1|scaffold_310 (581617-581813)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-116, gnl|bosTau2|chr6 (3047172-3047287)
               

               
               1-116, gnl|canFam2|chr32 (41119895-41120100)
               

               
               1-116, gnl|danRer3|chrNA (163262496-163262692)
               

               
               1-116, gnl|dasNov1|scaffold_61813 (3021-3226)
               

               
               1-116, gnl|echTel1|scaffold_277317 (48044-48249)
               

               
               1-116, gnl|fr1|chrUn (136186731-136186945)
               

               
               1-116, gnl|galGal2|chr4 (55271110-55270905)
               

               
               1-116, gnl|hg17|chr4 (120550078-120550283)
               

               
               1-116, gnl|Hg17|chr4 (120550120-120550235)
               

               
               1-116, gnl|loxAfr1|scaffold_2512 (80905-81110)
               

               
               1-116, gnl|mm7|chr3 (122788463-122788255)
               

               
               1-116, gnl|Mm7|chr3 (122788419-122788301)
               

               
               1-116, gnl|monDom2|scaffold_32 (8046964-8046753)
               

               
               1-116, gnl|oryCun1|scaffold_214279 (79865-80067)
               

               
               1-116, gnl|panTro1|chr3 (137156547-137156752)
               

               
               1-116, gnl|rheMac2|chr5 (111853545-111853750)
               

               
               1-116, gnl|rn3|chr2 (219611619-219611411)
               

               
               1-116, gnl|xenTro1|scaffold_310 (581617-581813)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	1-116, gnl\|bosTau2\|chr6 (3047172-3047287)
	1-116, gnl\|canFam2\|chr32 (41119895-41120100)
	1-116, gnl\|danRer3\|chrNA (163262496-163262692)
	1-116, gnl\|dasNov1\|scaffold_61813 (3021-3226)
	1-116, gnl\|echTel1\|scaffold_277317 (48044-48249)
	1-116, gnl\|fr1\|chrUn (136186731-136186945)
	1-116, gnl\|galGal2\|chr4 (55271110-55270905)
	1-116, gnl\|hg17\|chr4 (120550078-120550283)
	1-116, gnl\|Hg17\|chr4 (120550120-120550235)
	1-116, gnl\|loxAfr1\|scaffold_2512 (80905-81110)
	1-116, gnl\|mm7\|chr3 (122788463-122788255)
	1-116, gnl\|Mm7\|chr3 (122788419-122788301)
	1-116, gnl\|monDom2\|scaffold_32 (8046964-8046753)
	1-116, gnl\|oryCun1\|scaffold_214279 (79865-80067)
	1-116, gnl\|panTro1\|chr3 (137156547-137156752)
	1-116, gnl\|rheMac2\|chr5 (111853545-111853750)
	1-116, gnl\|rn3\|chr2 (219611619-219611411)
	1-116, gnl\|xenTro1\|scaffold_310 (581617-581813)