Non-Coding RNA Search

reru17c_i21.y1

Sequence:


               
               CTGAACTCTAGTGCACTTATGATTTTGTAGACCATGTGAAATTTAATAAGATCCTTTCTT
TCTTTTCTTTTCTTTTTTTTTTTTTTCCTTTCTTGTGTGTAGTGCAGCAACAGTTGGGTC
TGCATTTGTTAGAAGTTTAACTCCTAACAATCCAAAGACCTATTTAACAATTGGTGCATA
AATGAAAGTAGTACTGTATACTTGAAACTGTTTAAGTACAAGTTGAACAAAAAATTATGA
AAAGGTATATTTGCTTCTCGGGAAAGCAAAGAAGCTGCTTTAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAACTCTAGTGCACTTATGATTTTGTAGACCATGTGAAATTTAATAAGATCCTTTCTT
TCTTTTCTTTTCTTTTTTTTTTTTTTCCTTTCTTGTGTGTAGTGCAGCAACAGTTGGGTC
TGCATTTGTTAGAAGTTTAACTCCTAACAATCCAAAGACCTATTTAACAATTGGTGCATA
AATGAAAGTAGTACTGTATACTTGAAACTGTTTAAGTACAAGTTGAACAAAAAATTATGA
AAAGGTATATTTGCTTCTCGGGAAAGCAAAGAAGCTGCTTTAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               39-296, + strand, RNAz p=0.989327
               

               
               92-296, - strand, RNAz p=0.98125

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-296, + strand, RNAz p=0.989327
               

               
               92-296, - strand, RNAz p=0.98125

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               70-181, - strand, RNAmicro p=0.973294
               

               
               103-180, + strand, RNAmicro p=0.911078

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               70-181, - strand, RNAmicro p=0.973294
               

               
               103-180, + strand, RNAmicro p=0.911078

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-296, gnl|bosTau2|chr28 (18646829-18646550)
               

               
               1-296, gnl|canFam2|chr29 (27846297-27846734)
               

               
               1-296, gnl|danRer3|chr24 (20467261-20466780)
               

               
               1-296, gnl|dasNov1|scaffold_428 (134171-134607)
               

               
               1-296, gnl|echTel1|scaffold_279070 (42418-41980)
               

               
               1-296, gnl|fr1|chrUn (83300730-83300261)
               

               
               1-296, gnl|galGal2|chr2 (118944866-118945304)
               

               
               1-296, gnl|hg17|chr8 (77940007-77940443)
               

               
               1-296, gnl|Hg17|chr8 (77940236-77940505)
               

               
               1-296, gnl|loxAfr1|scaffold_496 (159527-159966)
               

               
               1-296, gnl|mm7|chr3 (5419520-5419958)
               

               
               1-296, gnl|Mm7|chr3 (5419749-5420021)
               

               
               1-296, gnl|monDom2|scaffold_4 (82665968-82665526)
               

               
               1-296, gnl|oryCun1|scaffold_214217 (54318-53883)
               

               
               1-296, gnl|panTro1|chr7 (80015322-80015759)
               

               
               1-296, gnl|rheMac2|chr8 (79337748-79338189)
               

               
               1-296, gnl|rn3|chr2 (98496541-98496103)
               

               
               1-296, gnl|tetNig1|chrUn_random (154828192-154827702)
               

               
               1-296, gnl|xenTro1|scaffold_1469 (84021-84500)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-296, gnl|bosTau2|chr28 (18646829-18646550)
               

               
               1-296, gnl|canFam2|chr29 (27846297-27846734)
               

               
               1-296, gnl|danRer3|chr24 (20467261-20466780)
               

               
               1-296, gnl|dasNov1|scaffold_428 (134171-134607)
               

               
               1-296, gnl|echTel1|scaffold_279070 (42418-41980)
               

               
               1-296, gnl|fr1|chrUn (83300730-83300261)
               

               
               1-296, gnl|galGal2|chr2 (118944866-118945304)
               

               
               1-296, gnl|hg17|chr8 (77940007-77940443)
               

               
               1-296, gnl|Hg17|chr8 (77940236-77940505)
               

               
               1-296, gnl|loxAfr1|scaffold_496 (159527-159966)
               

               
               1-296, gnl|mm7|chr3 (5419520-5419958)
               

               
               1-296, gnl|Mm7|chr3 (5419749-5420021)
               

               
               1-296, gnl|monDom2|scaffold_4 (82665968-82665526)
               

               
               1-296, gnl|oryCun1|scaffold_214217 (54318-53883)
               

               
               1-296, gnl|panTro1|chr7 (80015322-80015759)
               

               
               1-296, gnl|rheMac2|chr8 (79337748-79338189)
               

               
               1-296, gnl|rn3|chr2 (98496541-98496103)
               

               
               1-296, gnl|tetNig1|chrUn_random (154828192-154827702)
               

               
               1-296, gnl|xenTro1|scaffold_1469 (84021-84500)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	39-296, + strand, RNAz p=0.989327
	92-296, - strand, RNAz p=0.98125

	70-181, - strand, RNAmicro p=0.973294
	103-180, + strand, RNAmicro p=0.911078

	1-296, gnl\|bosTau2\|chr28 (18646829-18646550)
	1-296, gnl\|canFam2\|chr29 (27846297-27846734)
	1-296, gnl\|danRer3\|chr24 (20467261-20466780)
	1-296, gnl\|dasNov1\|scaffold_428 (134171-134607)
	1-296, gnl\|echTel1\|scaffold_279070 (42418-41980)
	1-296, gnl\|fr1\|chrUn (83300730-83300261)
	1-296, gnl\|galGal2\|chr2 (118944866-118945304)
	1-296, gnl\|hg17\|chr8 (77940007-77940443)
	1-296, gnl\|Hg17\|chr8 (77940236-77940505)
	1-296, gnl\|loxAfr1\|scaffold_496 (159527-159966)
	1-296, gnl\|mm7\|chr3 (5419520-5419958)
	1-296, gnl\|Mm7\|chr3 (5419749-5420021)
	1-296, gnl\|monDom2\|scaffold_4 (82665968-82665526)
	1-296, gnl\|oryCun1\|scaffold_214217 (54318-53883)
	1-296, gnl\|panTro1\|chr7 (80015322-80015759)
	1-296, gnl\|rheMac2\|chr8 (79337748-79338189)
	1-296, gnl\|rn3\|chr2 (98496541-98496103)
	1-296, gnl\|tetNig1\|chrUn_random (154828192-154827702)
	1-296, gnl\|xenTro1\|scaffold_1469 (84021-84500)