Non-Coding RNA Search

reru25c_b22.y1

Sequence:


               
               CTCCGCTGGAGCGCTGCGCACCCAGCCAGTTTGCCTGTCAGGCCGCCTCCGCTCCCGCCG
CCCGGCTTACAGCCGTGCGACGCCCGGCCCTTCCTCATGCTGGCACCTCCGGCCCCGGAG
GCCGCGGTCCCCATGCTCCAGTCGGAGGCCGACCTGGCCTTGCGGCCCTCGCCGCCTCTC
GCCGCCGCGGGACCGCCCCGGCTCGGGCCCCCTCCCCGCCGGGCGCGCCGCTTCTCCGGG
AAGGCTGAGCCCCGGCCGCGCTCCTCTCGTATCAGCCGCCGCAGCTCAGTCGACTTGGGG
CTGCTGAGCTCTTGGTCCCAGCCAGCCTCACCCGTTCCGGAGCCCCCGGATCCTCCGGAC
TCCGCTGGTTCCGGCCCCCCAAGGAACCCACCGCCCGGCTCTGAAGAGCCCCCTGAGGGC
ACGTGGACCGCGGGCGTCCAGGTGAAGGCTGCAGACCCTGTGAGTCCAGAGCTCGCGGGG
TCCACAGGAGCCTTGGGGTCCCGGGAATCGCAGAGGATCCCCGAGGCGGCGGCCCGGGAG
CGGCGGCGGGAGCAGGAGGAAAAGGAGGACATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCGCTGGAGCGCTGCGCACCCAGCCAGTTTGCCTGTCAGGCCGCCTCCGCTCCCGCCG
CCCGGCTTACAGCCGTGCGACGCCCGGCCCTTCCTCATGCTGGCACCTCCGGCCCCGGAG
GCCGCGGTCCCCATGCTCCAGTCGGAGGCCGACCTGGCCTTGCGGCCCTCGCCGCCTCTC
GCCGCCGCGGGACCGCCCCGGCTCGGGCCCCCTCCCCGCCGGGCGCGCCGCTTCTCCGGG
AAGGCTGAGCCCCGGCCGCGCTCCTCTCGTATCAGCCGCCGCAGCTCAGTCGACTTGGGG
CTGCTGAGCTCTTGGTCCCAGCCAGCCTCACCCGTTCCGGAGCCCCCGGATCCTCCGGAC
TCCGCTGGTTCCGGCCCCCCAAGGAACCCACCGCCCGGCTCTGAAGAGCCCCCTGAGGGC
ACGTGGACCGCGGGCGTCCAGGTGAAGGCTGCAGACCCTGTGAGTCCAGAGCTCGCGGGG
TCCACAGGAGCCTTGGGGTCCCGGGAATCGCAGAGGATCCCCGAGGCGGCGGCCCGGGAG
CGGCGGCGGGAGCAGGAGGAAAAGGAGGACATGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               232-351, - strand, RNAz p=0.983304
               

               
               432-574, - strand, RNAz p=0.862444

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-351, - strand, RNAz p=0.983304
               

               
               432-574, - strand, RNAz p=0.862444

Predicted microRNA(s): 3 entry(ies)

More info

Predicted microRNA(s): 3 entry(ies)

Help | Less info


               
               424-533, - strand, RNAmicro p=0.996739
               

               
               447-540, + strand, RNAmicro p=0.979615
               

               
               233-331, + strand, RNAmicro p=0.974314

Predicted microRNA(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               424-533, - strand, RNAmicro p=0.996739
               

               
               447-540, + strand, RNAmicro p=0.979615
               

               
               233-331, + strand, RNAmicro p=0.974314

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               48-574, gnl|bosTau2|chr19 (38956215-38955687)
               

               
               48-574, gnl|Hg17|chr17 (38186179-38186723)
               

               
               48-574, gnl|Mm7|chr11 (101369650-101370182)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-574, gnl|bosTau2|chr19 (38956215-38955687)
               

               
               48-574, gnl|Hg17|chr17 (38186179-38186723)
               

               
               48-574, gnl|Mm7|chr11 (101369650-101370182)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eru (0.120048)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	232-351, - strand, RNAz p=0.983304
	432-574, - strand, RNAz p=0.862444

	424-533, - strand, RNAmicro p=0.996739
	447-540, + strand, RNAmicro p=0.979615
	233-331, + strand, RNAmicro p=0.974314

	48-574, gnl\|bosTau2\|chr19 (38956215-38955687)
	48-574, gnl\|Hg17\|chr17 (38186179-38186723)
	48-574, gnl\|Mm7\|chr11 (101369650-101370182)