Non-Coding RNA Search

reru26c_h2.y1

Sequence:


               
               GGATCGCCTTCGCCGCCGCTTTGGCCAGTGCGCGGGGCCGTGCCCTGACAAGCTGCCTCG
GGGGAGGCTCTTCGGAGCCGGACCTGGACCCTCGTGATTGCCGCCTGCCCTCCCGCCTCT
GGTCTCACGAAGGGTTTCCCGCCTCGCACCCCCACCTCTGGACGTGCTTTTCCCTCCTCC
CCGCGTGCGGAGGGAGCCAGCGCTTAGGCCGGAGCGAGCCTGGGGGCCGCCGGCCGCGAA
GGCATCTCGGGCACAGATTCGCCATGGAAGGCGCCGGCGGCGCGAACGACAAGAAAAAAA
TAAGTTCTGAACGTCGAAAAGAGAAGTCTAGAGATGCAGCCAGATCTCGACGAAGTAAAG
AGTCTGAAGTTTTTTATGAGCTTGCTCATCAGTTGCCACTTCCCCATAATGTGAGCTCAC
ATCTTGATAAGGCTTCTGTTATGAGGCTTACCATCAGCTATTTGCGTGTGAGGAAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATCGCCTTCGCCGCCGCTTTGGCCAGTGCGCGGGGCCGTGCCCTGACAAGCTGCCTCG
GGGGAGGCTCTTCGGAGCCGGACCTGGACCCTCGTGATTGCCGCCTGCCCTCCCGCCTCT
GGTCTCACGAAGGGTTTCCCGCCTCGCACCCCCACCTCTGGACGTGCTTTTCCCTCCTCC
CCGCGTGCGGAGGGAGCCAGCGCTTAGGCCGGAGCGAGCCTGGGGGCCGCCGGCCGCGAA
GGCATCTCGGGCACAGATTCGCCATGGAAGGCGCCGGCGGCGCGAACGACAAGAAAAAAA
TAAGTTCTGAACGTCGAAAAGAGAAGTCTAGAGATGCAGCCAGATCTCGACGAAGTAAAG
AGTCTGAAGTTTTTTATGAGCTTGCTCATCAGTTGCCACTTCCCCATAATGTGAGCTCAC
ATCTTGATAAGGCTTCTGTTATGAGGCTTACCATCAGCTATTTGCGTGTGAGGAAACTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1160481|emb|CAA64458.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1160481|emb|CAA64458.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               362-479, + strand, RNAz p=0.63787

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               362-479, + strand, RNAz p=0.63787

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               300-479, gnl|bosTau2|chr10 (49807844-49807665)
               

               
               300-479, gnl|canFam2|chr8 (39663121-39663319)
               

               
               300-479, gnl|danRer3|chr20 (23480220-23480420)
               

               
               300-479, gnl|dasNov1|scaffold_3777 (21470-21270)
               

               
               300-479, gnl|echTel1|scaffold_316354 (57614-57414)
               

               
               300-479, gnl|fr1|chrUn (279394562-279394362)
               

               
               300-479, gnl|galGal2|chr5 (50728439-50728237)
               

               
               300-479, gnl|hg17|chr14 (61256850-61257050)
               

               
               300-479, gnl|Hg17|chr14 (61256854-61257033)
               

               
               300-479, gnl|loxAfr1|scaffold_365 (88229-88029)
               

               
               300-479, gnl|mm7|chr12 (71879287-71879487)
               

               
               300-479, gnl|Mm7|chr12 (71879291-71879470)
               

               
               300-479, gnl|monDom2|scaffold_8 (74643680-74643880)
               

               
               300-479, gnl|oryCun1|scaffold_198238 (51526-51326)
               

               
               300-479, gnl|panTro1|chr15 (60823871-60824071)
               

               
               300-479, gnl|rheMac2|chr7 (124716601-124716801)
               

               
               300-479, gnl|rn3|chr6 (96445820-96446020)
               

               
               300-479, gnl|tetNig1|chr10 (5670498-5670698)
               

               
               300-479, gnl|xenTro1|scaffold_673 (392628-392428)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               300-479, gnl|bosTau2|chr10 (49807844-49807665)
               

               
               300-479, gnl|canFam2|chr8 (39663121-39663319)
               

               
               300-479, gnl|danRer3|chr20 (23480220-23480420)
               

               
               300-479, gnl|dasNov1|scaffold_3777 (21470-21270)
               

               
               300-479, gnl|echTel1|scaffold_316354 (57614-57414)
               

               
               300-479, gnl|fr1|chrUn (279394562-279394362)
               

               
               300-479, gnl|galGal2|chr5 (50728439-50728237)
               

               
               300-479, gnl|hg17|chr14 (61256850-61257050)
               

               
               300-479, gnl|Hg17|chr14 (61256854-61257033)
               

               
               300-479, gnl|loxAfr1|scaffold_365 (88229-88029)
               

               
               300-479, gnl|mm7|chr12 (71879287-71879487)
               

               
               300-479, gnl|Mm7|chr12 (71879291-71879470)
               

               
               300-479, gnl|monDom2|scaffold_8 (74643680-74643880)
               

               
               300-479, gnl|oryCun1|scaffold_198238 (51526-51326)
               

               
               300-479, gnl|panTro1|chr15 (60823871-60824071)
               

               
               300-479, gnl|rheMac2|chr7 (124716601-124716801)
               

               
               300-479, gnl|rn3|chr6 (96445820-96446020)
               

               
               300-479, gnl|tetNig1|chr10 (5670498-5670698)
               

               
               300-479, gnl|xenTro1|scaffold_673 (392628-392428)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	300-479, gnl\|bosTau2\|chr10 (49807844-49807665)
	300-479, gnl\|canFam2\|chr8 (39663121-39663319)
	300-479, gnl\|danRer3\|chr20 (23480220-23480420)
	300-479, gnl\|dasNov1\|scaffold_3777 (21470-21270)
	300-479, gnl\|echTel1\|scaffold_316354 (57614-57414)
	300-479, gnl\|fr1\|chrUn (279394562-279394362)
	300-479, gnl\|galGal2\|chr5 (50728439-50728237)
	300-479, gnl\|hg17\|chr14 (61256850-61257050)
	300-479, gnl\|Hg17\|chr14 (61256854-61257033)
	300-479, gnl\|loxAfr1\|scaffold_365 (88229-88029)
	300-479, gnl\|mm7\|chr12 (71879287-71879487)
	300-479, gnl\|Mm7\|chr12 (71879291-71879470)
	300-479, gnl\|monDom2\|scaffold_8 (74643680-74643880)
	300-479, gnl\|oryCun1\|scaffold_198238 (51526-51326)
	300-479, gnl\|panTro1\|chr15 (60823871-60824071)
	300-479, gnl\|rheMac2\|chr7 (124716601-124716801)
	300-479, gnl\|rn3\|chr6 (96445820-96446020)
	300-479, gnl\|tetNig1\|chr10 (5670498-5670698)
	300-479, gnl\|xenTro1\|scaffold_673 (392628-392428)