Non-Coding RNA Search

reru27c_p22.y1

Sequence:


               
               AAAGCAAAAGCAGAAAAATAAAAAGTGAAGAGATTTCTGAATCCCAGATTAATGATCCAA
AGAATTGTATCCATGTCTTATCCAAATGCCAAGGAACACACGTGGAGACTAAAAAAGAGG
GCCCCGTGATGGCAGAAGATTTGAGGTTAAAGCTCATGCGGGGCAAGCTGAACCAGGTGC
CCCATCATTCACTGAATGGCGTGTCCAGAAGGAAGCTGAGCCGCCCTGCGGTCCGAGAGG
AAGGTGGCAGCAGAGGAGAGGCTGCGGTGCCTTCTCCCAGTACCAGCAGTGTCGCCTTAC
ATAGGAACACCAGTGCTCCAGACCTTCCTGTTCAGCAGCTGTGTCTGCAGGAGACTGAGA
GCTGGAAGGGGGCGCAGGAGCAGGTGCTCAGATATCATCTGGCCGGCCAAGATCAGATGC
TCCTGCTCTGCGGGGACCTCAGACGAGAGAGGCAGCGATTGCAGGACCAGCATTGTCTGG
GCGAGGAAAATGTCAACCTTGGGCTTTCCCAGGAGAAGGCGGCCTCTTGCCGTGCCACCG
AGGTGTTCTGCCTCCATTCAGTACGTTCGGAAGCTGTTCAGGCAGCTGTGATCAAGAAGC
A

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGCAAAAGCAGAAAAATAAAAAGTGAAGAGATTTCTGAATCCCAGATTAATGATCCAA
AGAATTGTATCCATGTCTTATCCAAATGCCAAGGAACACACGTGGAGACTAAAAAAGAGG
GCCCCGTGATGGCAGAAGATTTGAGGTTAAAGCTCATGCGGGGCAAGCTGAACCAGGTGC
CCCATCATTCACTGAATGGCGTGTCCAGAAGGAAGCTGAGCCGCCCTGCGGTCCGAGAGG
AAGGTGGCAGCAGAGGAGAGGCTGCGGTGCCTTCTCCCAGTACCAGCAGTGTCGCCTTAC
ATAGGAACACCAGTGCTCCAGACCTTCCTGTTCAGCAGCTGTGTCTGCAGGAGACTGAGA
GCTGGAAGGGGGCGCAGGAGCAGGTGCTCAGATATCATCTGGCCGGCCAAGATCAGATGC
TCCTGCTCTGCGGGGACCTCAGACGAGAGAGGCAGCGATTGCAGGACCAGCATTGTCTGG
GCGAGGAAAATGTCAACCTTGGGCTTTCCCAGGAGAAGGCGGCCTCTTGCCGTGCCACCG
AGGTGTTCTGCCTCCATTCAGTACGTTCGGAAGCTGTTCAGGCAGCTGTGATCAAGAAGC
A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               256-495, + strand, RNAz p=0.989563

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               256-495, + strand, RNAz p=0.989563

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               137-599, gnl|bosTau2|chr8 (33744294-33744758)
               

               
               137-599, gnl|Hg17|chr6 (51592279-51591830)
               

               
               137-599, gnl|Mm7|chr1 (20248196-20247765)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               137-599, gnl|bosTau2|chr8 (33744294-33744758)
               

               
               137-599, gnl|Hg17|chr6 (51592279-51591830)
               

               
               137-599, gnl|Mm7|chr1 (20248196-20247765)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	137-599, gnl\|bosTau2\|chr8 (33744294-33744758)
	137-599, gnl\|Hg17\|chr6 (51592279-51591830)
	137-599, gnl\|Mm7\|chr1 (20248196-20247765)