Non-Coding RNA Search

reru28c_c21.y1

Sequence:


               
               GTCCTCCCCCCCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCCGGGGTCCCCAGAATCA
CTATCAGTGACCCCTGAGGAGCGTCAGCCACGGAAGGGCCCAGCCTCACCTACGCGACCT
GCAGTCCCCCGGCCACCTGAGGCTCCCCTCTTAGACTTATAAGCCTGTGGCCGCTGGCAT
CCCGCCACCTGCCCTTCCTCCCTCCCCAGGGTCCCGTCAGAGGACTCCTGGGCTTTCTGC
CCACCCAGAGGGGCCTCGAGCGCTCCCTCCAGCCAGTCTTTGTAGCTTTGCCCTCCTGGT
TCAAACAGTGTTCTTTGTCTTGTCTTTCTCCATCAGGCCTGGTGGCTGTCACATGGGGCT
CATGGCCCCATGTTTCCCCAGGGCTAGGGGTGGCCCTAGGCCAGTGGGTTCAAAGACAGG
AGGGCCAGAGAAGAGGGAAGCCAGAGGGGGCCGAGCACGTGTCTGGAGCTGTGGGTGCAC
TGCCTGGTGGTGTGTGAGAGACCAGTGTGTGTGGCGGGGGGCGCTGTCCCAGCCTTTACT
CCAGAGCCCCGTGGAGCTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCTCCCCCCCAGGTGCCCTCGCGCCCCAACCGCGCCCCGCCCGGGGTCCCCAGAATCA
CTATCAGTGACCCCTGAGGAGCGTCAGCCACGGAAGGGCCCAGCCTCACCTACGCGACCT
GCAGTCCCCCGGCCACCTGAGGCTCCCCTCTTAGACTTATAAGCCTGTGGCCGCTGGCAT
CCCGCCACCTGCCCTTCCTCCCTCCCCAGGGTCCCGTCAGAGGACTCCTGGGCTTTCTGC
CCACCCAGAGGGGCCTCGAGCGCTCCCTCCAGCCAGTCTTTGTAGCTTTGCCCTCCTGGT
TCAAACAGTGTTCTTTGTCTTGTCTTTCTCCATCAGGCCTGGTGGCTGTCACATGGGGCT
CATGGCCCCATGTTTCCCCAGGGCTAGGGGTGGCCCTAGGCCAGTGGGTTCAAAGACAGG
AGGGCCAGAGAAGAGGGAAGCCAGAGGGGGCCGAGCACGTGTCTGGAGCTGTGGGTGCAC
TGCCTGGTGGTGTGTGAGAGACCAGTGTGTGTGGCGGGGGGCGCTGTCCCAGCCTTTACT
CCAGAGCCCCGTGGAGCTCTG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               92-440, + strand, RNAz p=0.999374
               

               
               154-282, - strand, RNAz p=0.930409
               

               
               314-432, - strand, RNAz p=0.999448

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               92-440, + strand, RNAz p=0.999374
               

               
               154-282, - strand, RNAz p=0.930409
               

               
               314-432, - strand, RNAz p=0.999448

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               340-406, + strand, RNAmicro p=0.999214

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               340-406, + strand, RNAmicro p=0.999214

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               92-316, 603024710F1 NIH_MGC_114 Homo sapiens cDNA clone IMAGE (gb|BI755392.1|), 
blast E-value=0, identity=87.17% 
               

               
               92-362, 532647 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BM480940.1|), 
blast E-value=0, identity=87.96% 
               

               
               92-275, BovGen_19913 normal cattle brain Bos taurus cDNA clone (gb|CO891588.1|), 
blast E-value=0, identity=90.22% 
               

               
               92-325, LIB3934-030-A1-K1-A4 LIB3934 Canis familiaris cDNA clone 
(gb|DN391567.1|), blast E-value=0, identity=90.25% 
               

               
               92-349, LB01823.CR_L23 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE224161.1|), 
blast E-value=0, identity=88.51% 
               

               
               92-362, LB01731.CR.1_K05 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|EE334977.1|), 
blast E-value=0, identity=87.96%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               92-316, 603024710F1 NIH_MGC_114 Homo sapiens cDNA clone IMAGE (gb|BI755392.1|), 
blast E-value=0, identity=87.17% 
               

               
               92-362, 532647 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BM480940.1|), 
blast E-value=0, identity=87.96% 
               

               
               92-275, BovGen_19913 normal cattle brain Bos taurus cDNA clone (gb|CO891588.1|), 
blast E-value=0, identity=90.22% 
               

               
               92-325, LIB3934-030-A1-K1-A4 LIB3934 Canis familiaris cDNA clone 
(gb|DN391567.1|), blast E-value=0, identity=90.25% 
               

               
               92-349, LB01823.CR_L23 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb|EE224161.1|), 
blast E-value=0, identity=88.51% 
               

               
               92-362, LB01731.CR.1_K05 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|EE334977.1|), 
blast E-value=0, identity=87.96%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK127038, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK127038, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               92-561, gnl|bosTau2|chr11 (78148196-78148674)
               

               
               92-561, gnl|canFam2|chr9 (58597695-58597041)
               

               
               92-561, gnl|dasNov1|scaffold_165374 (508-1179)
               

               
               92-561, gnl|echTel1|scaffold_307138 (6921-6413)
               

               
               92-561, gnl|hg17|chr5 (174277296-174277944)
               

               
               92-561, gnl|Hg17|chr9 (128095841-128096284)
               

               
               92-561, gnl|mm7|chr2 (32316964-32316397)
               

               
               92-561, gnl|Mm7|chr2 (32316946-32316550)
               

               
               92-561, gnl|monDom2|scaffold_51 (2779761-2780486)
               

               
               92-561, gnl|oryCun1|scaffold_158642 (1603-960)
               

               
               92-561, gnl|panTro1|chr4_random (21645714-21645064)
               

               
               92-561, gnl|rheMac2|chr6 (171349665-171350299)
               

               
               92-561, gnl|rn3|chr3 (11332330-11331760)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               92-561, gnl|bosTau2|chr11 (78148196-78148674)
               

               
               92-561, gnl|canFam2|chr9 (58597695-58597041)
               

               
               92-561, gnl|dasNov1|scaffold_165374 (508-1179)
               

               
               92-561, gnl|echTel1|scaffold_307138 (6921-6413)
               

               
               92-561, gnl|hg17|chr5 (174277296-174277944)
               

               
               92-561, gnl|Hg17|chr9 (128095841-128096284)
               

               
               92-561, gnl|mm7|chr2 (32316964-32316397)
               

               
               92-561, gnl|Mm7|chr2 (32316946-32316550)
               

               
               92-561, gnl|monDom2|scaffold_51 (2779761-2780486)
               

               
               92-561, gnl|oryCun1|scaffold_158642 (1603-960)
               

               
               92-561, gnl|panTro1|chr4_random (21645714-21645064)
               

               
               92-561, gnl|rheMac2|chr6 (171349665-171350299)
               

               
               92-561, gnl|rn3|chr3 (11332330-11331760)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	92-440, + strand, RNAz p=0.999374
	154-282, - strand, RNAz p=0.930409
	314-432, - strand, RNAz p=0.999448

	92-316, 603024710F1 NIH_MGC_114 Homo sapiens cDNA clone IMAGE (gb\|BI755392.1\|), blast E-value=0, identity=87.17%
	92-362, 532647 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM480940.1\|), blast E-value=0, identity=87.96%
	92-275, BovGen_19913 normal cattle brain Bos taurus cDNA clone (gb\|CO891588.1\|), blast E-value=0, identity=90.22%
	92-325, LIB3934-030-A1-K1-A4 LIB3934 Canis familiaris cDNA clone (gb\|DN391567.1\|), blast E-value=0, identity=90.25%
	92-349, LB01823.CR_L23 GC_BGC-18 Bos taurus cDNA clone IMAGE (gb\|EE224161.1\|), blast E-value=0, identity=88.51%
	92-362, LB01731.CR.1_K05 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb\|EE334977.1\|), blast E-value=0, identity=87.96%

	92-561, gnl\|bosTau2\|chr11 (78148196-78148674)
	92-561, gnl\|canFam2\|chr9 (58597695-58597041)
	92-561, gnl\|dasNov1\|scaffold_165374 (508-1179)
	92-561, gnl\|echTel1\|scaffold_307138 (6921-6413)
	92-561, gnl\|hg17\|chr5 (174277296-174277944)
	92-561, gnl\|Hg17\|chr9 (128095841-128096284)
	92-561, gnl\|mm7\|chr2 (32316964-32316397)
	92-561, gnl\|Mm7\|chr2 (32316946-32316550)
	92-561, gnl\|monDom2\|scaffold_51 (2779761-2780486)
	92-561, gnl\|oryCun1\|scaffold_158642 (1603-960)
	92-561, gnl\|panTro1\|chr4_random (21645714-21645064)
	92-561, gnl\|rheMac2\|chr6 (171349665-171350299)
	92-561, gnl\|rn3\|chr3 (11332330-11331760)