Non-Coding RNA Search

reru29c_k14.y1

Sequence:


               
               GCCAAGGACATTTACCGGCAGCGCTCGCGGGCACTGGTACAGAAGCAGCACCCAGACTGG
CCAGCTCCTTGGGTGGAGGCAGCAGCTCAGGACCAGTTCCAGGAAGCTGCACAAACCTGG
ATGGCAGGCACCCTCAAGCTGGGACAAACACTGCGGCCTCATGGGCTCTGGGGCTTCTAT
GGCTTCCCTGACTGCTATAACTATGATTTTCAAAGCTCCAACTACACAGGCCAGTGCCCC
CCAGGAGTCAGTGCCCAGAATGACCAACTAGGGTGGCTGTGGGGCCAGAGCCGTGCCCTC
TATCCTAGCATCTACCTGCCCTCAGCACTGGAGGGCACGAATAAGACTCAGCTGTATGTG
CAGCATCGCGTCAATGAGGCATTCCGTGTGGCCGCGGCTGCTGGGGACCCCAATCTGCCA
GTGCTGCCCTATGCCCAGATCTTCCACGACATGACTAACCGCCTTCTGTCTCGGGAGGAG
CTGGAACACAGCCTGGGGGAGAGTGCAGCCCAGGGGGCAGCAGGAGTGGTGCTCTGGGTG
AGCTGGGAGAACACAAGAACCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAAGGACATTTACCGGCAGCGCTCGCGGGCACTGGTACAGAAGCAGCACCCAGACTGG
CCAGCTCCTTGGGTGGAGGCAGCAGCTCAGGACCAGTTCCAGGAAGCTGCACAAACCTGG
ATGGCAGGCACCCTCAAGCTGGGACAAACACTGCGGCCTCATGGGCTCTGGGGCTTCTAT
GGCTTCCCTGACTGCTATAACTATGATTTTCAAAGCTCCAACTACACAGGCCAGTGCCCC
CCAGGAGTCAGTGCCCAGAATGACCAACTAGGGTGGCTGTGGGGCCAGAGCCGTGCCCTC
TATCCTAGCATCTACCTGCCCTCAGCACTGGAGGGCACGAATAAGACTCAGCTGTATGTG
CAGCATCGCGTCAATGAGGCATTCCGTGTGGCCGCGGCTGCTGGGGACCCCAATCTGCCA
GTGCTGCCCTATGCCCAGATCTTCCACGACATGACTAACCGCCTTCTGTCTCGGGAGGAG
CTGGAACACAGCCTGGGGGAGAGTGCAGCCCAGGGGGCAGCAGGAGTGGTGCTCTGGGTG
AGCTGGGAGAACACAAGAACCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|45708645|gb|AAH25774.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|45708645|gb|AAH25774.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-200, - strand, RNAz p=0.941254
               

               
               281-388, - strand, RNAz p=0.59152

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-200, - strand, RNAz p=0.941254
               

               
               281-388, - strand, RNAz p=0.59152

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-388, gnl|bosTau2|chr22 (38567435-38567050)
               

               
               2-388, gnl|Hg17|chr3 (50314964-50313725)
               

               
               2-388, gnl|Mm7|chr9 (107307452-107307780)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-388, gnl|bosTau2|chr22 (38567435-38567050)
               

               
               2-388, gnl|Hg17|chr3 (50314964-50313725)
               

               
               2-388, gnl|Mm7|chr9 (107307452-107307780)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	41-200, - strand, RNAz p=0.941254
	281-388, - strand, RNAz p=0.59152

	2-388, gnl\|bosTau2\|chr22 (38567435-38567050)
	2-388, gnl\|Hg17\|chr3 (50314964-50313725)
	2-388, gnl\|Mm7\|chr9 (107307452-107307780)