Non-Coding RNA Search

reru30c_a23.y1

Sequence:


               
               CGCAAGCACATCAAAGCCAGATGAACGTTAATTTGCAAAAATGCTTGCCTTGGGTCGAGG
GGCAGCTAAAATCCATTGCTGATGTATTGATGGGCTCAGAACTTCTGAAACACATCGTTC
TGTCATTAGATGGATGACACTTTTTGCTGATAGTGGAGTCCGCATGCCACACTCATACTA
GGTGAGAATCTAGTATAAACATTAAAAAATAGTTGTCATTTGGTGACATCGTGTTCCACT
TAGCAGCACCTATAGATTTCTTACCTTTTGTTCAAAGAATAAATCTTTTGAAATCTCCAC
TGTTAAATTGGGATATATGAGTCTTTTAATAGGCGTTTTGAAAGGGAGTGGAAAATTTAC
AGTTCCTCGTAAATAGCCTGACATGAAAGTTAAAATCAATAGTGTATTGTTCAGCCACGC
CATCAAAACTGAACCTTAAGGGCGTGAGTCTTTCTCATTCTCATCTAATAGAGCTGGCTC
CCCAAAATTCTTTCCTAGGTGTGGTCTTCTCTTAATTAGTGGCGATATAACGATGTGCCA
CAGACCATCTGTTTATTTCAGAAATGTTACAATGTTTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAAGCACATCAAAGCCAGATGAACGTTAATTTGCAAAAATGCTTGCCTTGGGTCGAGG
GGCAGCTAAAATCCATTGCTGATGTATTGATGGGCTCAGAACTTCTGAAACACATCGTTC
TGTCATTAGATGGATGACACTTTTTGCTGATAGTGGAGTCCGCATGCCACACTCATACTA
GGTGAGAATCTAGTATAAACATTAAAAAATAGTTGTCATTTGGTGACATCGTGTTCCACT
TAGCAGCACCTATAGATTTCTTACCTTTTGTTCAAAGAATAAATCTTTTGAAATCTCCAC
TGTTAAATTGGGATATATGAGTCTTTTAATAGGCGTTTTGAAAGGGAGTGGAAAATTTAC
AGTTCCTCGTAAATAGCCTGACATGAAAGTTAAAATCAATAGTGTATTGTTCAGCCACGC
CATCAAAACTGAACCTTAAGGGCGTGAGTCTTTCTCATTCTCATCTAATAGAGCTGGCTC
CCCAAAATTCTTTCCTAGGTGTGGTCTTCTCTTAATTAGTGGCGATATAACGATGTGCCA
CAGACCATCTGTTTATTTCAGAAATGTTACAATGTTTGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               131-248, + strand, RNAz p=0.577459

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               131-248, + strand, RNAz p=0.577459

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               12-578, gnl|bosTau2|chr16 (20763458-20764018)
               

               
               12-578, gnl|Hg17|chr1 (241569236-241569825)
               

               
               12-578, gnl|Mm7|chr1 (178454203-178454709)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-578, gnl|bosTau2|chr16 (20763458-20764018)
               

               
               12-578, gnl|Hg17|chr1 (241569236-241569825)
               

               
               12-578, gnl|Mm7|chr1 (178454203-178454709)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	12-578, gnl\|bosTau2\|chr16 (20763458-20764018)
	12-578, gnl\|Hg17\|chr1 (241569236-241569825)
	12-578, gnl\|Mm7\|chr1 (178454203-178454709)