Non-Coding RNA Search

reru30c_g8.y1

Sequence:


               
               AGAATTAGCCCATGACCTTTCTTTCAAGAATGTACAACCTAAAGATGAGGATAAAGTTCC
TGTCCCAGATGAATTCTCCAAAGATAGGGCTGATATTTCAAAGGTGCCCTTGCTGCCTCC
AGATGATTCTGCTTTGGCTGCTCCAACAGAGATAGCTGATGTAGTTAAACCCAAAGTTCT
TGTGAAAGAAGCTGAGAAAATACTTCCTTCTGATAGAGAAAAAGAGAAAAGATCGCCATC
TGCTATATTTTCAGCAGAGCTGAGTAAAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATTAGCCCATGACCTTTCTTTCAAGAATGTACAACCTAAAGATGAGGATAAAGTTCC
TGTCCCAGATGAATTCTCCAAAGATAGGGCTGATATTTCAAAGGTGCCCTTGCTGCCTCC
AGATGATTCTGCTTTGGCTGCTCCAACAGAGATAGCTGATGTAGTTAAACCCAAAGTTCT
TGTGAAAGAAGCTGAGAAAATACTTCCTTCTGATAGAGAAAAAGAGAAAAGATCGCCATC
TGCTATATTTTCAGCAGAGCTGAGTAAAACTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               8-112, - strand, RNAz p=0.548782
               

               
               154-272, - strand, RNAz p=0.898433

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               8-112, - strand, RNAz p=0.548782
               

               
               154-272, - strand, RNAz p=0.898433

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-272, gnl|bosTau2|chr11 (27915855-27915590)
               

               
               1-272, gnl|canFam2|chr10 (59079647-59080103)
               

               
               1-272, gnl|echTel1|scaffold_318688 (32322-32778)
               

               
               1-272, gnl|galGal2|chr3 (2445593-2445122)
               

               
               1-272, gnl|hg17|chr2 (55163809-55164263)
               

               
               1-272, gnl|Hg17|chr2 (55164147-55163876)
               

               
               1-272, gnl|loxAfr1|scaffold_5382 (56512-56056)
               

               
               1-272, gnl|mm7|chr11 (29660833-29660406)
               

               
               1-272, gnl|Mm7|chr11 (29660508-29660773)
               

               
               1-272, gnl|monDom2|scaffold_1 (17877676-17878151)
               

               
               1-272, gnl|panTro1|chr12 (57292161-57292615)
               

               
               1-272, gnl|rheMac2|chr13 (55319940-55320393)
               

               
               1-272, gnl|rn3|chr14 (110767207-110766771)
               

               
               1-272, gnl|xenTro1|scaffold_234 (846910-846484)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-272, gnl|bosTau2|chr11 (27915855-27915590)
               

               
               1-272, gnl|canFam2|chr10 (59079647-59080103)
               

               
               1-272, gnl|echTel1|scaffold_318688 (32322-32778)
               

               
               1-272, gnl|galGal2|chr3 (2445593-2445122)
               

               
               1-272, gnl|hg17|chr2 (55163809-55164263)
               

               
               1-272, gnl|Hg17|chr2 (55164147-55163876)
               

               
               1-272, gnl|loxAfr1|scaffold_5382 (56512-56056)
               

               
               1-272, gnl|mm7|chr11 (29660833-29660406)
               

               
               1-272, gnl|Mm7|chr11 (29660508-29660773)
               

               
               1-272, gnl|monDom2|scaffold_1 (17877676-17878151)
               

               
               1-272, gnl|panTro1|chr12 (57292161-57292615)
               

               
               1-272, gnl|rheMac2|chr13 (55319940-55320393)
               

               
               1-272, gnl|rn3|chr14 (110767207-110766771)
               

               
               1-272, gnl|xenTro1|scaffold_234 (846910-846484)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	8-112, - strand, RNAz p=0.548782
	154-272, - strand, RNAz p=0.898433

	1-272, gnl\|bosTau2\|chr11 (27915855-27915590)
	1-272, gnl\|canFam2\|chr10 (59079647-59080103)
	1-272, gnl\|echTel1\|scaffold_318688 (32322-32778)
	1-272, gnl\|galGal2\|chr3 (2445593-2445122)
	1-272, gnl\|hg17\|chr2 (55163809-55164263)
	1-272, gnl\|Hg17\|chr2 (55164147-55163876)
	1-272, gnl\|loxAfr1\|scaffold_5382 (56512-56056)
	1-272, gnl\|mm7\|chr11 (29660833-29660406)
	1-272, gnl\|Mm7\|chr11 (29660508-29660773)
	1-272, gnl\|monDom2\|scaffold_1 (17877676-17878151)
	1-272, gnl\|panTro1\|chr12 (57292161-57292615)
	1-272, gnl\|rheMac2\|chr13 (55319940-55320393)
	1-272, gnl\|rn3\|chr14 (110767207-110766771)
	1-272, gnl\|xenTro1\|scaffold_234 (846910-846484)