Non-Coding RNA Search

reru31c_e18.y1

Sequence:


               
               TGGCTGTCCTGCTGGGAGCCTGCCAGGCACGTCCCATTCCTGACTCCAGCCCCCTCCTCC
AATTTGGGGGCCAAGTGCGCCAACGATACCTCTACACGGATGATGCCCAGGAAACTGAAG
CCCACCTGGAGATCAGAGCTGATGGCACCGTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCTGTCCTGCTGGGAGCCTGCCAGGCACGTCCCATTCCTGACTCCAGCCCCCTCCTCC
AATTTGGGGGCCAAGTGCGCCAACGATACCTCTACACGGATGATGCCCAGGAAACTGAAG
CCCACCTGGAGATCAGAGCTGATGGCACCGTGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               35-153, - strand, RNAz p=0.586324

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-153, - strand, RNAz p=0.586324

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               7-153, gnl|bosTau2|chr18 (49935651-49935797)
               

               
               7-153, gnl|canFam2|chr1 (110459102-110458827)
               

               
               7-153, gnl|echTel1|scaffold_36881 (1048-767)
               

               
               7-153, gnl|hg17|chr19 (53951277-53951559)
               

               
               7-153, gnl|Hg17|chr19 (53951367-53951513)
               

               
               7-153, gnl|loxAfr1|scaffold_212645 (681-963)
               

               
               7-153, gnl|mm7|chr7 (41791431-41791153)
               

               
               7-153, gnl|Mm7|chr7 (41791336-41791190)
               

               
               7-153, gnl|oryCun1|scaffold_197155 (7715-7979)
               

               
               7-153, gnl|panTro1|chr20 (51334936-51335218)
               

               
               7-153, gnl|rheMac2|chr19 (55063784-55064066)
               

               
               7-153, gnl|rn3|chr1 (96161856-96161575)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-153, gnl|bosTau2|chr18 (49935651-49935797)
               

               
               7-153, gnl|canFam2|chr1 (110459102-110458827)
               

               
               7-153, gnl|echTel1|scaffold_36881 (1048-767)
               

               
               7-153, gnl|hg17|chr19 (53951277-53951559)
               

               
               7-153, gnl|Hg17|chr19 (53951367-53951513)
               

               
               7-153, gnl|loxAfr1|scaffold_212645 (681-963)
               

               
               7-153, gnl|mm7|chr7 (41791431-41791153)
               

               
               7-153, gnl|Mm7|chr7 (41791336-41791190)
               

               
               7-153, gnl|oryCun1|scaffold_197155 (7715-7979)
               

               
               7-153, gnl|panTro1|chr20 (51334936-51335218)
               

               
               7-153, gnl|rheMac2|chr19 (55063784-55064066)
               

               
               7-153, gnl|rn3|chr1 (96161856-96161575)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	7-153, gnl\|bosTau2\|chr18 (49935651-49935797)
	7-153, gnl\|canFam2\|chr1 (110459102-110458827)
	7-153, gnl\|echTel1\|scaffold_36881 (1048-767)
	7-153, gnl\|hg17\|chr19 (53951277-53951559)
	7-153, gnl\|Hg17\|chr19 (53951367-53951513)
	7-153, gnl\|loxAfr1\|scaffold_212645 (681-963)
	7-153, gnl\|mm7\|chr7 (41791431-41791153)
	7-153, gnl\|Mm7\|chr7 (41791336-41791190)
	7-153, gnl\|oryCun1\|scaffold_197155 (7715-7979)
	7-153, gnl\|panTro1\|chr20 (51334936-51335218)
	7-153, gnl\|rheMac2\|chr19 (55063784-55064066)
	7-153, gnl\|rn3\|chr1 (96161856-96161575)