Non-Coding RNA Search

reru31c_o20.y1

Sequence:


               
               GACGGCACATCCCCATTCCAGCAGCTGCTCTCACAGGCACTGGCGTTTTATCTGGGAAAC
ACGGGGCGGGGGAGGTTCCCAAAGCGTGGCGGCTCTTTCACAGTCCCAGGACTGCAGTTC
CGCCCAGGAGCTCTTCCCTCCTGCTAGGACATCCCCTTCTCCTTTCCCAAGTCCCCTGGG
AACTTAAGGTCATTGAGAAATAGTGTTTGATCAGGGTTTTCCCGCTTCCACACTGTAGGT
GACCCCTTGGAATAGTGGCCTCTCCTCTCTTTTGCACATACCTACCGGTTTCCACAACTG
GATTTCTACAGATCATTCAGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGGCACATCCCCATTCCAGCAGCTGCTCTCACAGGCACTGGCGTTTTATCTGGGAAAC
ACGGGGCGGGGGAGGTTCCCAAAGCGTGGCGGCTCTTTCACAGTCCCAGGACTGCAGTTC
CGCCCAGGAGCTCTTCCCTCCTGCTAGGACATCCCCTTCTCCTTTCCCAAGTCCCCTGGG
AACTTAAGGTCATTGAGAAATAGTGTTTGATCAGGGTTTTCCCGCTTCCACACTGTAGGT
GACCCCTTGGAATAGTGGCCTCTCCTCTCTTTTGCACATACCTACCGGTTTCCACAACTG
GATTTCTACAGATCATTCAGCTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               77-226, + strand, RNAz p=0.737941

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-226, + strand, RNAz p=0.737941

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               12-324, gnl|bosTau2|chr21 (1833784-1833476)
               

               
               12-324, gnl|canFam2|chr3 (44950782-44950977)
               

               
               12-324, gnl|dasNov1|scaffold_288576 (450-647)
               

               
               12-324, gnl|echTel1|scaffold_322027 (225691-225879)
               

               
               12-324, gnl|galGal2|chr10 (17288703-17288518)
               

               
               12-324, gnl|hg17|chr15 (97321718-97321908)
               

               
               12-324, gnl|Hg17|chr15 (97321725-97322026)
               

               
               12-324, gnl|loxAfr1|scaffold_4932 (64613-64787)
               

               
               12-324, gnl|mm7|chr7 (64085951-64086140)
               

               
               12-324, gnl|Mm7|chr7 (64085952-64086254)
               

               
               12-324, gnl|monDom2|scaffold_12 (62335729-62335916)
               

               
               12-324, gnl|oryCun1|scaffold_117896 (7210-7359)
               

               
               12-324, gnl|panTro1|chr16 (98387841-98388032)
               

               
               12-324, gnl|rheMac2|chr7 (78970448-78970646)
               

               
               12-324, gnl|rn3|chr1 (123071424-123071611)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-324, gnl|bosTau2|chr21 (1833784-1833476)
               

               
               12-324, gnl|canFam2|chr3 (44950782-44950977)
               

               
               12-324, gnl|dasNov1|scaffold_288576 (450-647)
               

               
               12-324, gnl|echTel1|scaffold_322027 (225691-225879)
               

               
               12-324, gnl|galGal2|chr10 (17288703-17288518)
               

               
               12-324, gnl|hg17|chr15 (97321718-97321908)
               

               
               12-324, gnl|Hg17|chr15 (97321725-97322026)
               

               
               12-324, gnl|loxAfr1|scaffold_4932 (64613-64787)
               

               
               12-324, gnl|mm7|chr7 (64085951-64086140)
               

               
               12-324, gnl|Mm7|chr7 (64085952-64086254)
               

               
               12-324, gnl|monDom2|scaffold_12 (62335729-62335916)
               

               
               12-324, gnl|oryCun1|scaffold_117896 (7210-7359)
               

               
               12-324, gnl|panTro1|chr16 (98387841-98388032)
               

               
               12-324, gnl|rheMac2|chr7 (78970448-78970646)
               

               
               12-324, gnl|rn3|chr1 (123071424-123071611)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	12-324, gnl\|bosTau2\|chr21 (1833784-1833476)
	12-324, gnl\|canFam2\|chr3 (44950782-44950977)
	12-324, gnl\|dasNov1\|scaffold_288576 (450-647)
	12-324, gnl\|echTel1\|scaffold_322027 (225691-225879)
	12-324, gnl\|galGal2\|chr10 (17288703-17288518)
	12-324, gnl\|hg17\|chr15 (97321718-97321908)
	12-324, gnl\|Hg17\|chr15 (97321725-97322026)
	12-324, gnl\|loxAfr1\|scaffold_4932 (64613-64787)
	12-324, gnl\|mm7\|chr7 (64085951-64086140)
	12-324, gnl\|Mm7\|chr7 (64085952-64086254)
	12-324, gnl\|monDom2\|scaffold_12 (62335729-62335916)
	12-324, gnl\|oryCun1\|scaffold_117896 (7210-7359)
	12-324, gnl\|panTro1\|chr16 (98387841-98388032)
	12-324, gnl\|rheMac2\|chr7 (78970448-78970646)
	12-324, gnl\|rn3\|chr1 (123071424-123071611)