rese06c_c14.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACCTGAGCCATGACAGCGCCCCCCCAGGCAGGTCAGCTCGGCCCCTCGTACAGACGGA GCTGGCCGTGCTGGAGCAACGGCTGGTTTCACTGGAGACTTCGTGTACACCCAGTACCAC CTCAGCCATCCTGGACAACCTCGTGGCCGAGGTGAAGGCCTGGCAGAGCCGGAGCGAGGC CCTCCTGCGTCAGGTGGCAAGCCACGCAATCCTGCTCCAGCAGCTCAAGGGCACCGTGGC TGAGGTCCAGGGGCAGCTGGCAGAAGCGACGGGCAGCTCCCTCCAAGGCGAGATCACCCT GCTCAAGGTCAATCTGAACTCTGTGAGCAAGTCACTCACGGGCCTCAGTGACTCTGTCAG CCAGTACTCAGATGCCTTCTTGGCTGCCAACACATCCCTGGATGAGCGGGAACGCAAGGT GGAAGCCGAGGTCCAAGCCATCCAGGAGCAGGTCAGCAGCCAAGGTTCTCAGCTACGGGC TGGCCACAGGCAGGTTCTGAGCCTGCGGGGGGAGCTGGAGCAACTCAAGGCTGGTGTGGC CAGTGTGGCTGGCGGGCTCAGCCGCTGCCAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACCTGAGCCATGACAGCGCCCCCCCAGGCAGGTCAGCTCGGCCCCTCGTACAGACGGA GCTGGCCGTGCTGGAGCAACGGCTGGTTTCACTGGAGACTTCGTGTACACCCAGTACCAC CTCAGCCATCCTGGACAACCTCGTGGCCGAGGTGAAGGCCTGGCAGAGCCGGAGCGAGGC CCTCCTGCGTCAGGTGGCAAGCCACGCAATCCTGCTCCAGCAGCTCAAGGGCACCGTGGC TGAGGTCCAGGGGCAGCTGGCAGAAGCGACGGGCAGCTCCCTCCAAGGCGAGATCACCCT GCTCAAGGTCAATCTGAACTCTGTGAGCAAGTCACTCACGGGCCTCAGTGACTCTGTCAG CCAGTACTCAGATGCCTTCTTGGCTGCCAACACATCCCTGGATGAGCGGGAACGCAAGGT GGAAGCCGAGGTCCAAGCCATCCAGGAGCAGGTCAGCAGCCAAGGTTCTCAGCTACGGGC TGGCCACAGGCAGGTTCTGAGCCTGCGGGGGGAGCTGGAGCAACTCAAGGCTGGTGTGGC CAGTGTGGCTGGCGGGCTCAGCCGCTGCCAGG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 376-572, - strand, RNAz p=0.937183 | |
| 416-572, - strand, RNAz p=0.87701 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 376-572, - strand, RNAz p=0.937183 | |
| 416-572, - strand, RNAz p=0.87701 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-235, gnl|bosTau2|chr13 (51566355-51566121) | |
| 1-235, gnl|Hg17|chr20 (39424165-39423933) | |
| 1-235, gnl|Mm7|chr2 (160649281-160649048) | |
| 376-572, gnl|bosTau2|chr13 (51566070-51565875) | |
| 376-572, gnl|canFam2|chr24 (32333214-32333395) | |
| 376-572, gnl|danRer3|chr23 (1138925-1139097) | |
| 376-572, gnl|dasNov1|scaffold_191614 (3916-3735) | |
| 376-572, gnl|echTel1|scaffold_294934 (3360-3193) | |
| 376-572, gnl|fr1|chrUn (58173840-58174011) | |
| 376-572, gnl|galGal2|chr20 (4714389-4714561) | |
| 376-572, gnl|hg17|chr20 (39423540-39423721) | |
| 376-572, gnl|Hg17|chr20 (39423789-39423594) | |
| 376-572, gnl|loxAfr1|scaffold_57398 (8623-8442) | |
| 376-572, gnl|mm7|chr2 (160648656-160648837) | |
| 376-572, gnl|Mm7|chr2 (160648906-160648710) | |
| 376-572, gnl|monDom2|scaffold_6 (7038668-7038840) | |
| 376-572, gnl|oryCun1|scaffold_213708 (193901-193720) | |
| 376-572, gnl|panTro1|chr21 (41864298-41864479) | |
| 376-572, gnl|rheMac2|chr10 (23096518-23096337) | |
| 376-572, gnl|rn3|chr3 (151610834-151611015) | |
| 376-572, gnl|tetNig1|chr9 (5677497-5677668) | |
| 376-572, gnl|xenTro1|scaffold_637 (144302-144474) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-235, gnl|bosTau2|chr13 (51566355-51566121) | |
| 1-235, gnl|Hg17|chr20 (39424165-39423933) | |
| 1-235, gnl|Mm7|chr2 (160649281-160649048) | |
| 376-572, gnl|bosTau2|chr13 (51566070-51565875) | |
| 376-572, gnl|canFam2|chr24 (32333214-32333395) | |
| 376-572, gnl|danRer3|chr23 (1138925-1139097) | |
| 376-572, gnl|dasNov1|scaffold_191614 (3916-3735) | |
| 376-572, gnl|echTel1|scaffold_294934 (3360-3193) | |
| 376-572, gnl|fr1|chrUn (58173840-58174011) | |
| 376-572, gnl|galGal2|chr20 (4714389-4714561) | |
| 376-572, gnl|hg17|chr20 (39423540-39423721) | |
| 376-572, gnl|Hg17|chr20 (39423789-39423594) | |
| 376-572, gnl|loxAfr1|scaffold_57398 (8623-8442) | |
| 376-572, gnl|mm7|chr2 (160648656-160648837) | |
| 376-572, gnl|Mm7|chr2 (160648906-160648710) | |
| 376-572, gnl|monDom2|scaffold_6 (7038668-7038840) | |
| 376-572, gnl|oryCun1|scaffold_213708 (193901-193720) | |
| 376-572, gnl|panTro1|chr21 (41864298-41864479) | |
| 376-572, gnl|rheMac2|chr10 (23096518-23096337) | |
| 376-572, gnl|rn3|chr3 (151610834-151611015) | |
| 376-572, gnl|tetNig1|chr9 (5677497-5677668) | |
| 376-572, gnl|xenTro1|scaffold_637 (144302-144474) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |