Non-Coding RNA Search

rese06c_l5.y1

Sequence:


               
               CAGCTCTCTGCACGGTCTGGCACCCAAGCTCCAGCGCCAGTACCGCTCCCCTCGACGCAA
GTCAGCAGGCAGCATCCCGCTGTCACCGCTGGCCCACACCCCTTCTCCACCAGCAGCCGC
TTCACCCCAGCGTTCCCCATCGCCCCTGTCTGGCCACGGAGCCCAGGCCTTCCCCACCAA
GCTTCACCTGTCACCTCCCCTAGGCCGGCAGCTCTCACGGCCCAAGAGTGCAGAGCCACC
CCGCTCACCGCTCCTTAAGAGGGTCCAGTCGGCTGAGAAACTGGCAGCCGCACTAGCTGC
TTCCGAGAAGAAGCTGGCCGCTTCTCGAAAACACAGCCTTGACCTGCCCCACCCTGAGCT
AAAAAAGGAACTGCCACCCAGGGAAGTCAGCCCTCTGGAGGTGGTTGGCACCAGGAGTGT
GCTGCCAGGGAAGGGGGTGCTGCAGCCTGCCCCCTCACGGGCCCTGGGCACCCTCCGCCA
GGACCGGGCTGAACGGCGAGAGTCCCTGCAGAAGCAGGAAGCCATCCGGGAGGTGGACTC
TTCGGAAGATGACACGGATGAGGGGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTCTCTGCACGGTCTGGCACCCAAGCTCCAGCGCCAGTACCGCTCCCCTCGACGCAA
GTCAGCAGGCAGCATCCCGCTGTCACCGCTGGCCCACACCCCTTCTCCACCAGCAGCCGC
TTCACCCCAGCGTTCCCCATCGCCCCTGTCTGGCCACGGAGCCCAGGCCTTCCCCACCAA
GCTTCACCTGTCACCTCCCCTAGGCCGGCAGCTCTCACGGCCCAAGAGTGCAGAGCCACC
CCGCTCACCGCTCCTTAAGAGGGTCCAGTCGGCTGAGAAACTGGCAGCCGCACTAGCTGC
TTCCGAGAAGAAGCTGGCCGCTTCTCGAAAACACAGCCTTGACCTGCCCCACCCTGAGCT
AAAAAAGGAACTGCCACCCAGGGAAGTCAGCCCTCTGGAGGTGGTTGGCACCAGGAGTGT
GCTGCCAGGGAAGGGGGTGCTGCAGCCTGCCCCCTCACGGGCCCTGGGCACCCTCCGCCA
GGACCGGGCTGAACGGCGAGAGTCCCTGCAGAAGCAGGAAGCCATCCGGGAGGTGGACTC
TTCGGAAGATGACACGGATGAGGGGCCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-197, - strand, RNAz p=0.960707

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-197, - strand, RNAz p=0.960707

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-443, gnl|bosTau2|chr3 (70170273-70169832)
               

               
               2-443, gnl|Hg17|chr1 (46212310-46212754)
               

               
               2-443, gnl|Mm7|chr4 (115684696-115684252)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-443, gnl|bosTau2|chr3 (70170273-70169832)
               

               
               2-443, gnl|Hg17|chr1 (46212310-46212754)
               

               
               2-443, gnl|Mm7|chr4 (115684696-115684252)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	2-443, gnl\|bosTau2\|chr3 (70170273-70169832)
	2-443, gnl\|Hg17\|chr1 (46212310-46212754)
	2-443, gnl\|Mm7\|chr4 (115684696-115684252)