Non-Coding RNA Search

rese08c_c8.y1

Sequence:


               
               ACAGTGTCTACCAGGTCAGTGGCAGTGGGGTGTTCCTCAGTCCCCTGCCTCTTCTGCTTC
ATTCTTATACCTGGCAACCTTCTGAGGTTATCTATCAACCAGTGGAAATTGCACAAGATG
GTGGATGTGTTCCTCCTCCACTATCTCTAATGGAAGCCTCAGTTCCAGAGCCTTATTCTG
ATCATGGAGTTCAAGCAACATATCACCAGGTTTATGCTTCAAGTGCCATTGCTATGCCTG
CACCTGTGATGCAGCCTGAACCAATTAAAACAGTGTGGAGCGTTCACTATTAAGACAATT
GGGCAGCTCTAGTCCAACTCAACTGATTTCTTGTCCAATGATCCTTGTGTGGCCGAGATC
CAGCTTCAACGAACCGGCTAGAAGCTGCCCGTTGTGAAATTTAGGGTTAGTTAATACCTC
ACCATACTTCATTATTCCACAATAAGCTGTCTAAATTTGATGCAGTTTGCTTTTTCAGCT
GTTCCACAAAATTATCAGGTAGATGTGGCATGTTGGTTTTTTTAATGTGTATTCTAACTG
TAGTGACATTTTCTACAACATGTTTTATCCATTCCATAAATAATAATCACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGTGTCTACCAGGTCAGTGGCAGTGGGGTGTTCCTCAGTCCCCTGCCTCTTCTGCTTC
ATTCTTATACCTGGCAACCTTCTGAGGTTATCTATCAACCAGTGGAAATTGCACAAGATG
GTGGATGTGTTCCTCCTCCACTATCTCTAATGGAAGCCTCAGTTCCAGAGCCTTATTCTG
ATCATGGAGTTCAAGCAACATATCACCAGGTTTATGCTTCAAGTGCCATTGCTATGCCTG
CACCTGTGATGCAGCCTGAACCAATTAAAACAGTGTGGAGCGTTCACTATTAAGACAATT
GGGCAGCTCTAGTCCAACTCAACTGATTTCTTGTCCAATGATCCTTGTGTGGCCGAGATC
CAGCTTCAACGAACCGGCTAGAAGCTGCCCGTTGTGAAATTTAGGGTTAGTTAATACCTC
ACCATACTTCATTATTCCACAATAAGCTGTCTAAATTTGATGCAGTTTGCTTTTTCAGCT
GTTCCACAAAATTATCAGGTAGATGTGGCATGTTGGTTTTTTTAATGTGTATTCTAACTG
TAGTGACATTTTCTACAACATGTTTTATCCATTCCATAAATAATAATCACATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61811005|ref|XP_606246.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61811005|ref|XP_606246.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               39-153, - strand, RNAz p=0.913046
               

               
               53-170, + strand, RNAz p=0.837319

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-153, - strand, RNAz p=0.913046
               

               
               53-170, + strand, RNAz p=0.837319

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               39-170, gnl|bosTau2|chr2 (52189848-52189718)
               

               
               39-170, gnl|canFam2|chr37 (10191486-10191676)
               

               
               39-170, gnl|galGal2|chr7 (11177049-11176845)
               

               
               39-170, gnl|hg17|chr2 (198446652-198446842)
               

               
               39-170, gnl|Hg17|chr2 (198446788-198446658)
               

               
               39-170, gnl|loxAfr1|scaffold_20595 (14908-14718)
               

               
               39-170, gnl|mm7|chr1 (55551802-55551976)
               

               
               39-170, gnl|Mm7|chr1 (55551938-55551808)
               

               
               39-170, gnl|monDom2|scaffold_2 (107492363-107492575)
               

               
               39-170, gnl|oryCun1|scaffold_5873 (8598-8418)
               

               
               39-170, gnl|panTro1|chr13 (88405024-88405214)
               

               
               39-170, gnl|rheMac2|chr12 (61346932-61347122)
               

               
               39-170, gnl|rn3|chr9 (54240394-54240568)
               


               
               338-593, gnl|bosTau2|chr23 (33809718-33809974)
               

               
               338-593, gnl|Hg17|chr2 (198418737-198418485)
               

               
               338-593, gnl|Mm7|chr1 (55517906-55517658)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               39-170, gnl|bosTau2|chr2 (52189848-52189718)
               

               
               39-170, gnl|canFam2|chr37 (10191486-10191676)
               

               
               39-170, gnl|galGal2|chr7 (11177049-11176845)
               

               
               39-170, gnl|hg17|chr2 (198446652-198446842)
               

               
               39-170, gnl|Hg17|chr2 (198446788-198446658)
               

               
               39-170, gnl|loxAfr1|scaffold_20595 (14908-14718)
               

               
               39-170, gnl|mm7|chr1 (55551802-55551976)
               

               
               39-170, gnl|Mm7|chr1 (55551938-55551808)
               

               
               39-170, gnl|monDom2|scaffold_2 (107492363-107492575)
               

               
               39-170, gnl|oryCun1|scaffold_5873 (8598-8418)
               

               
               39-170, gnl|panTro1|chr13 (88405024-88405214)
               

               
               39-170, gnl|rheMac2|chr12 (61346932-61347122)
               

               
               39-170, gnl|rn3|chr9 (54240394-54240568)
               


               
               338-593, gnl|bosTau2|chr23 (33809718-33809974)
               

               
               338-593, gnl|Hg17|chr2 (198418737-198418485)
               

               
               338-593, gnl|Mm7|chr1 (55517906-55517658)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	39-153, - strand, RNAz p=0.913046
	53-170, + strand, RNAz p=0.837319

	39-170, gnl\|bosTau2\|chr2 (52189848-52189718)
	39-170, gnl\|canFam2\|chr37 (10191486-10191676)
	39-170, gnl\|galGal2\|chr7 (11177049-11176845)
	39-170, gnl\|hg17\|chr2 (198446652-198446842)
	39-170, gnl\|Hg17\|chr2 (198446788-198446658)
	39-170, gnl\|loxAfr1\|scaffold_20595 (14908-14718)
	39-170, gnl\|mm7\|chr1 (55551802-55551976)
	39-170, gnl\|Mm7\|chr1 (55551938-55551808)
	39-170, gnl\|monDom2\|scaffold_2 (107492363-107492575)
	39-170, gnl\|oryCun1\|scaffold_5873 (8598-8418)
	39-170, gnl\|panTro1\|chr13 (88405024-88405214)
	39-170, gnl\|rheMac2\|chr12 (61346932-61347122)
	39-170, gnl\|rn3\|chr9 (54240394-54240568)

	338-593, gnl\|bosTau2\|chr23 (33809718-33809974)
	338-593, gnl\|Hg17\|chr2 (198418737-198418485)
	338-593, gnl\|Mm7\|chr1 (55517906-55517658)