rese08c_m14.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAACTGGAAGACGTCTCAACACTGTTTCTTTTTTCAGAAGTTTGTTTTGAATGTTTGCAT TTCTCGGTACGGAACACTCACCCTAAAGGCAGCCGGGGGTTTGTGCCCATTGGATTGGAA GTGGTGCCAAGGGTGAGCAGGTCCAAAGCAAGGGAGGGGAGGGCAAGGGAGGGGAAGGCA GAACGCAGGTCTTCATGGTTGACCTTGAAGAAGAGAAGGAGGCAGACGTGCACATCAAGC CAGGGGTTTCTGAGGGCTGAGACTCTGCCTCTCTTTTAGCGCGGGTGGCTTCAGTAGGAG CAGGAAAGAAAGGAGGGTGGGTGATGCACTGGACAGAAACTGGCACGTGGCCTCTGCTGG GGGCAGTAGTGACTCCTCGCTCGCATCCTTTCCTTTGAAGGTTTAGGAACCTGATTTCAG AATCACCTCTCATAGAAGCTGTGTTCGTTTGGTTTGACTGAATTCCCAAATTCTGTGACC TCAAGTTAGCCCTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAACTGGAAGACGTCTCAACACTGTTTCTTTTTTCAGAAGTTTGTTTTGAATGTTTGCAT TTCTCGGTACGGAACACTCACCCTAAAGGCAGCCGGGGGTTTGTGCCCATTGGATTGGAA GTGGTGCCAAGGGTGAGCAGGTCCAAAGCAAGGGAGGGGAGGGCAAGGGAGGGGAAGGCA GAACGCAGGTCTTCATGGTTGACCTTGAAGAAGAGAAGGAGGCAGACGTGCACATCAAGC CAGGGGTTTCTGAGGGCTGAGACTCTGCCTCTCTTTTAGCGCGGGTGGCTTCAGTAGGAG CAGGAAAGAAAGGAGGGTGGGTGATGCACTGGACAGAAACTGGCACGTGGCCTCTGCTGG GGGCAGTAGTGACTCCTCGCTCGCATCCTTTCCTTTGAAGGTTTAGGAACCTGATTTCAG AATCACCTCTCATAGAAGCTGTGTTCGTTTGGTTTGACTGAATTCCCAAATTCTGTGACC TCAAGTTAGCCCTGT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 43-162, + strand, RNAz p=0.988973 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 43-162, + strand, RNAz p=0.988973 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-162, gnl|bosTau2|chr19 (32845979-32846139) | |
| 1-162, gnl|canFam2|chr9 (27102520-27101950) | |
| 1-162, gnl|dasNov1|scaffold_10341 (16435-15853) | |
| 1-162, gnl|hg17|chr17 (33809430-33809982) | |
| 1-162, gnl|Hg17|chr17 (33809508-33809669) | |
| 1-162, gnl|mm7|chr11 (97502562-97503077) | |
| 1-162, gnl|Mm7|chr11 (97502637-97502781) | |
| 1-162, gnl|monDom2|scaffold_18 (47223358-47223912) | |
| 1-162, gnl|oryCun1|scaffold_199982 (8048-8602) | |
| 1-162, gnl|panTro1|chr19 (36919137-36919687) | |
| 1-162, gnl|rheMac2|chr16 (48416395-48416943) | |
| 1-162, gnl|rn3|chr10 (86148481-86149002) | |
| 175-465, gnl|bosTau2|chr19 (32846178-32846474) | |
| 175-465, gnl|canFam2|chr9 (27102520-27101950) | |
| 175-465, gnl|dasNov1|scaffold_10341 (16435-15853) | |
| 175-465, gnl|hg17|chr17 (33809430-33809982) | |
| 175-465, gnl|Hg17|chr17 (33809701-33809996) | |
| 175-465, gnl|mm7|chr11 (97502562-97503077) | |
| 175-465, gnl|Mm7|chr11 (97502807-97503090) | |
| 175-465, gnl|monDom2|scaffold_18 (47223358-47223912) | |
| 175-465, gnl|oryCun1|scaffold_199982 (8048-8602) | |
| 175-465, gnl|panTro1|chr19 (36919137-36919687) | |
| 175-465, gnl|rheMac2|chr16 (48416395-48416943) | |
| 175-465, gnl|rn3|chr10 (86148481-86149002) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-162, gnl|bosTau2|chr19 (32845979-32846139) | |
| 1-162, gnl|canFam2|chr9 (27102520-27101950) | |
| 1-162, gnl|dasNov1|scaffold_10341 (16435-15853) | |
| 1-162, gnl|hg17|chr17 (33809430-33809982) | |
| 1-162, gnl|Hg17|chr17 (33809508-33809669) | |
| 1-162, gnl|mm7|chr11 (97502562-97503077) | |
| 1-162, gnl|Mm7|chr11 (97502637-97502781) | |
| 1-162, gnl|monDom2|scaffold_18 (47223358-47223912) | |
| 1-162, gnl|oryCun1|scaffold_199982 (8048-8602) | |
| 1-162, gnl|panTro1|chr19 (36919137-36919687) | |
| 1-162, gnl|rheMac2|chr16 (48416395-48416943) | |
| 1-162, gnl|rn3|chr10 (86148481-86149002) | |
| 175-465, gnl|bosTau2|chr19 (32846178-32846474) | |
| 175-465, gnl|canFam2|chr9 (27102520-27101950) | |
| 175-465, gnl|dasNov1|scaffold_10341 (16435-15853) | |
| 175-465, gnl|hg17|chr17 (33809430-33809982) | |
| 175-465, gnl|Hg17|chr17 (33809701-33809996) | |
| 175-465, gnl|mm7|chr11 (97502562-97503077) | |
| 175-465, gnl|Mm7|chr11 (97502807-97503090) | |
| 175-465, gnl|monDom2|scaffold_18 (47223358-47223912) | |
| 175-465, gnl|oryCun1|scaffold_199982 (8048-8602) | |
| 175-465, gnl|panTro1|chr19 (36919137-36919687) | |
| 175-465, gnl|rheMac2|chr16 (48416395-48416943) | |
| 175-465, gnl|rn3|chr10 (86148481-86149002) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |