Non-Coding RNA Search

rese09c_m10.y1

Sequence:


               
               ATAAAATCTCCAAGGGAAAGTCACAATTTTCTCAACCAACTGTACCATTTCTAGGAATTG
AGTTATCAAAAGGACAAAGAAACTTATTGCCGAGTCGAAGGGAAGCATTAGCTGAGGTAG
AGGTACCTGccaccagaaagcaattgagaagattcttagcaatggctgagttttgtcgga
tttggattcctaactttggactcatagtcaaacctctgtatGAGGCTCTCAAAAGGAGTG
TCAATGAGCCACTGAGCTGGACTGAAGAATGCCTTGAGGCATTCCATACCATCCAGAAGA
AAATTTTAAAAGCCCCAGCACTTGGTCTCCCAGACATCGGAAAGCCATTTGATCTTTTTG
TGCATGAAAGACAGGGCCTGAGTCTTGGAGTGCTCACTCAAAATTTAGATTCTGCCAGAA
GGCCGGTAGCTTACTTTTCCAAACAATTGGATGCTGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAAATCTCCAAGGGAAAGTCACAATTTTCTCAACCAACTGTACCATTTCTAGGAATTG
AGTTATCAAAAGGACAAAGAAACTTATTGCCGAGTCGAAGGGAAGCATTAGCTGAGGTAG
AGGTACCTGccaccagaaagcaattgagaagattcttagcaatggctgagttttgtcgga
tttggattcctaactttggactcatagtcaaacctctgtatGAGGCTCTCAAAAGGAGTG
TCAATGAGCCACTGAGCTGGACTGAAGAATGCCTTGAGGCATTCCATACCATCCAGAAGA
AAATTTTAAAAGCCCCAGCACTTGGTCTCCCAGACATCGGAAAGCCATTTGATCTTTTTG
TGCATGAAAGACAGGGCCTGAGTCTTGGAGTGCTCACTCAAAATTTAGATTCTGCCAGAA
GGCCGGTAGCTTACTTTTCCAAACAATTGGATGCTGTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-353, - strand, RNAz p=0.992962

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-353, - strand, RNAz p=0.992962

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-459, gnl|bosTau2|chr2 (85988583-85989041)
               

               
               1-459, gnl|Hg17|chr1 (29707216-29706757)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-459, gnl|bosTau2|chr2 (85988583-85989041)
               

               
               1-459, gnl|Hg17|chr1 (29707216-29706757)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	1-459, gnl\|bosTau2\|chr2 (85988583-85989041)
	1-459, gnl\|Hg17\|chr1 (29707216-29706757)