Non-Coding RNA Search

rese14c_i20.y1

Sequence:


               
               CATCAGCGCTGGGCTGCGGCCCGGGGCCGGCTGGAGACTGAGCCCGGAGGAGCCGGGCTG
GAACGGCCTCGCCCACCGCCGGGCCGCGCTGCTGCACTACGAGAACCTGCCCTCCCTGCC
GCCCGTGTGGGAGAGCCAGGCCCAGCCGCTGGGGGAGGAGGCAGCGGAGGACGGGGACTC
GAGGGACGGGCTCACGCCCTCCTCCAACGGCTTCCCCGAAGGCGAGGAGGACGAGACCCC
GCTGCAGAAGCCCACCAGCACCCGGGCTGCCCTCCGCAGCCACGGCAGCTTCCCTGTGCC
GCTGACCCGCCGCCGAGGCTCCCCAAGGGTCTTCAACTTCGATTTCCGCCGGCCGGGCCC
CGAGCCCCCGAGGCAGCTCAACTACATCCAGGTGGAGCTGAAGGGCTGGGGAGGAGACCG
GCCCAAGGGGCCCCAGAACCCCTCGGCCCCGCGAGCCCCTGTGCCCATCACCCACCCTGC
CCGCAGCTCAGACTCCTACGCCGTGATCGACCTCAAAAAGACCGTGGCCATGTCCAACCT
GCAGAGGGCTCTGCCCCGCGACGACGGCACCGCCAGGAAAACCCGGCACAACAGCACCGA
CCTGCCTCTGTAGGGACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCAGCGCTGGGCTGCGGCCCGGGGCCGGCTGGAGACTGAGCCCGGAGGAGCCGGGCTG
GAACGGCCTCGCCCACCGCCGGGCCGCGCTGCTGCACTACGAGAACCTGCCCTCCCTGCC
GCCCGTGTGGGAGAGCCAGGCCCAGCCGCTGGGGGAGGAGGCAGCGGAGGACGGGGACTC
GAGGGACGGGCTCACGCCCTCCTCCAACGGCTTCCCCGAAGGCGAGGAGGACGAGACCCC
GCTGCAGAAGCCCACCAGCACCCGGGCTGCCCTCCGCAGCCACGGCAGCTTCCCTGTGCC
GCTGACCCGCCGCCGAGGCTCCCCAAGGGTCTTCAACTTCGATTTCCGCCGGCCGGGCCC
CGAGCCCCCGAGGCAGCTCAACTACATCCAGGTGGAGCTGAAGGGCTGGGGAGGAGACCG
GCCCAAGGGGCCCCAGAACCCCTCGGCCCCGCGAGCCCCTGTGCCCATCACCCACCCTGC
CCGCAGCTCAGACTCCTACGCCGTGATCGACCTCAAAAAGACCGTGGCCATGTCCAACCT
GCAGAGGGCTCTGCCCCGCGACGACGGCACCGCCAGGAAAACCCGGCACAACAGCACCGA
CCTGCCTCTGTAGGGACCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               162-281, - strand, RNAz p=0.567374
               

               
               362-481, - strand, RNAz p=0.809932

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               162-281, - strand, RNAz p=0.567374
               

               
               362-481, - strand, RNAz p=0.809932

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               374-488, - strand, RNAmicro p=0.984734
               

               
               158-270, - strand, RNAmicro p=0.968675

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               374-488, - strand, RNAmicro p=0.984734
               

               
               158-270, - strand, RNAmicro p=0.968675

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-615, gnl|bosTau2|chr23 (15305282-15304670)
               

               
               3-615, gnl|Hg17|chr6 (41846945-41846333)
               

               
               3-615, gnl|Mm7|chr17 (45839792-45840403)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-615, gnl|bosTau2|chr23 (15305282-15304670)
               

               
               3-615, gnl|Hg17|chr6 (41846945-41846333)
               

               
               3-615, gnl|Mm7|chr17 (45839792-45840403)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	162-281, - strand, RNAz p=0.567374
	362-481, - strand, RNAz p=0.809932

	374-488, - strand, RNAmicro p=0.984734
	158-270, - strand, RNAmicro p=0.968675

	3-615, gnl\|bosTau2\|chr23 (15305282-15304670)
	3-615, gnl\|Hg17\|chr6 (41846945-41846333)
	3-615, gnl\|Mm7\|chr17 (45839792-45840403)