rese15c_b5.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGCAGAATGGAGACTTGAAGTGCTAAATGAAACAATCCAAAGGAAACTTTTTAATACA GATTCTAGCCGAAGAATTCAACTATAATAAAATTGTATTTATATAATGTTTAGTATTTTT GAAGACTAGTGAGATTTCTTTAATAATTTTAACTCTTTAAAAAGTAAAAGCTCATTGTAT GGATATTTCCTTTTTGCTATTAGAAGGAGATATTAAGAGAAAAACTTATTTCTTTGTCAT ACAGTTGGTAATTTCAATTCTTGTTTGTTTGGCTGACTAATTTGTAAGCCTAAAGTGTAG TAAGCTGAATTACAGCTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGCAGAATGGAGACTTGAAGTGCTAAATGAAACAATCCAAAGGAAACTTTTTAATACA GATTCTAGCCGAAGAATTCAACTATAATAAAATTGTATTTATATAATGTTTAGTATTTTT GAAGACTAGTGAGATTTCTTTAATAATTTTAACTCTTTAAAAAGTAAAAGCTCATTGTAT GGATATTTCCTTTTTGCTATTAGAAGGAGATATTAAGAGAAAAACTTATTTCTTTGTCAT ACAGTTGGTAATTTCAATTCTTGTTTGTTTGGCTGACTAATTTGTAAGCCTAAAGTGTAG TAAGCTGAATTACAGCTCT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 210-319, - strand, RNAz p=0.923265 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 210-319, - strand, RNAz p=0.923265 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-319, gnl|bosTau2|chr24 (19683324-19683004) | |
| 1-319, gnl|canFam2|chr7 (60503443-60502971) | |
| 1-319, gnl|canFam2|chr7 (60502891-60503566) | |
| 1-319, gnl|dasNov1|scaffold_46092 (7802-8484) | |
| 1-319, gnl|dasNov1|scaffold_82768 (5771-6243) | |
| 1-319, gnl|echTel1|scaffold_315500 (26113-26589) | |
| 1-319, gnl|echTel1|scaffold_315500 (26680-25997) | |
| 1-319, gnl|hg17|chr18 (27963324-27963815) | |
| 1-319, gnl|Hg17|chr18 (27963577-27963884) | |
| 1-319, gnl|hg17|chr5 (54861019-54861684) | |
| 1-319, gnl|loxAfr1|scaffold_48720 (5062-4577) | |
| 1-319, gnl|loxAfr1|scaffold_48720 (4490-5185) | |
| 1-319, gnl|mm7|chr18 (21397047-21397488) | |
| 1-319, gnl|mm7|chr18 (21397558-21396930) | |
| 1-319, gnl|Mm7|chr18 (21397262-21397554) | |
| 1-319, gnl|monDom2|scaffold_10 (24076818-24077557) | |
| 1-319, gnl|monDom2|scaffold_4 (123952133-123951598) | |
| 1-319, gnl|oryCun1|scaffold_178459 (1999-1526) | |
| 1-319, gnl|oryCun1|scaffold_178459 (1453-2121) | |
| 1-319, gnl|panTro1|chr17 (23870757-23871257) | |
| 1-319, gnl|panTro1|chr4_random (36502005-36502677) | |
| 1-319, gnl|rheMac2|chr18 (25067715-25068207) | |
| 1-319, gnl|rheMac2|chr18 (25068283-25067598) | |
| 1-319, gnl|rn3|chr18 (12813399-12813832) | |
| 1-319, gnl|rn3|chr3 (4858529-4859148) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-319, gnl|bosTau2|chr24 (19683324-19683004) | |
| 1-319, gnl|canFam2|chr7 (60503443-60502971) | |
| 1-319, gnl|canFam2|chr7 (60502891-60503566) | |
| 1-319, gnl|dasNov1|scaffold_46092 (7802-8484) | |
| 1-319, gnl|dasNov1|scaffold_82768 (5771-6243) | |
| 1-319, gnl|echTel1|scaffold_315500 (26113-26589) | |
| 1-319, gnl|echTel1|scaffold_315500 (26680-25997) | |
| 1-319, gnl|hg17|chr18 (27963324-27963815) | |
| 1-319, gnl|Hg17|chr18 (27963577-27963884) | |
| 1-319, gnl|hg17|chr5 (54861019-54861684) | |
| 1-319, gnl|loxAfr1|scaffold_48720 (5062-4577) | |
| 1-319, gnl|loxAfr1|scaffold_48720 (4490-5185) | |
| 1-319, gnl|mm7|chr18 (21397047-21397488) | |
| 1-319, gnl|mm7|chr18 (21397558-21396930) | |
| 1-319, gnl|Mm7|chr18 (21397262-21397554) | |
| 1-319, gnl|monDom2|scaffold_10 (24076818-24077557) | |
| 1-319, gnl|monDom2|scaffold_4 (123952133-123951598) | |
| 1-319, gnl|oryCun1|scaffold_178459 (1999-1526) | |
| 1-319, gnl|oryCun1|scaffold_178459 (1453-2121) | |
| 1-319, gnl|panTro1|chr17 (23870757-23871257) | |
| 1-319, gnl|panTro1|chr4_random (36502005-36502677) | |
| 1-319, gnl|rheMac2|chr18 (25067715-25068207) | |
| 1-319, gnl|rheMac2|chr18 (25068283-25067598) | |
| 1-319, gnl|rn3|chr18 (12813399-12813832) | |
| 1-319, gnl|rn3|chr3 (4858529-4859148) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |