Non-Coding RNA Search

rese15c_h3.y1

Sequence:


               
               GTTGAAGAATGCCATTGCTGGAGGGCAGACATCTGCTCCTCCTCCTCGGTTTACAGATAG
AGAAACTGAGGCGCAGAGGGGCTTGGTGACGTAGCCGTGGTCTCAGCAAGACTCTCAGAC
CTACGTGCTCAGTCCTGCACAGCTCAGCCTGGCGCTGCGTGTGTGCACCAGGATCTGTGG
ATGTGCATGTGGGGTCAGGCAGGCTTGCAGCAAACTGCCCTGCCTGAGAATGGTTCCCAA
CGCCCTTCTCTCCCCTGCAGGAAGCGAGTTGCCCGTGTGTGCGAGCTGCGGCCAGAGGAT
CTATGATGGCCAGTACCTCCAGGCCCTGAATGCTGACTGGCACGCAGACTGCTTCAGGTA
GGGTGGGCTGGCGGGTGCTGGGATGCTCTCAGCAAGGCCTGCCAGAGACATGGCCATCCC
TCCTGGTGCCATGTCTGGTTGTGACCTCCAGCGAGTCCTTGGCCTCTGTTTCCCTGTCTG
TAAAATGAGGCATTTGGACTGGAAGATCCCTTGAGGCCTTTCCCTTTTGTCATTCTAGAC
CTCCAAGGAGAGATAAGGAGCGGCTCGCATTTATGCTCCTAATACCACAGCCTGCTGGCA
C

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGAAGAATGCCATTGCTGGAGGGCAGACATCTGCTCCTCCTCCTCGGTTTACAGATAG
AGAAACTGAGGCGCAGAGGGGCTTGGTGACGTAGCCGTGGTCTCAGCAAGACTCTCAGAC
CTACGTGCTCAGTCCTGCACAGCTCAGCCTGGCGCTGCGTGTGTGCACCAGGATCTGTGG
ATGTGCATGTGGGGTCAGGCAGGCTTGCAGCAAACTGCCCTGCCTGAGAATGGTTCCCAA
CGCCCTTCTCTCCCCTGCAGGAAGCGAGTTGCCCGTGTGTGCGAGCTGCGGCCAGAGGAT
CTATGATGGCCAGTACCTCCAGGCCCTGAATGCTGACTGGCACGCAGACTGCTTCAGGTA
GGGTGGGCTGGCGGGTGCTGGGATGCTCTCAGCAAGGCCTGCCAGAGACATGGCCATCCC
TCCTGGTGCCATGTCTGGTTGTGACCTCCAGCGAGTCCTTGGCCTCTGTTTCCCTGTCTG
TAAAATGAGGCATTTGGACTGGAAGATCCCTTGAGGCCTTTCCCTTTTGTCATTCTAGAC
CTCCAAGGAGAGATAAGGAGCGGCTCGCATTTATGCTCCTAATACCACAGCCTGCTGGCA
C

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|41472284|gb|AAS07436.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|41472284|gb|AAS07436.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               249-368, + strand, RNAz p=0.729983

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-368, + strand, RNAz p=0.729983

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-422, gnl|bosTau2|chr25 (29142917-29142486)
               

               
               3-422, gnl|Hg17|chr7 (72944448-72944919)
               

               
               3-422, gnl|Mm7|chr5 (133658252-133657848)
               


               
               455-601, gnl|bosTau2|chr25 (29142481-29142336)
               

               
               455-601, gnl|Hg17|chr7 (72944923-72945738)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-422, gnl|bosTau2|chr25 (29142917-29142486)
               

               
               3-422, gnl|Hg17|chr7 (72944448-72944919)
               

               
               3-422, gnl|Mm7|chr5 (133658252-133657848)
               


               
               455-601, gnl|bosTau2|chr25 (29142481-29142336)
               

               
               455-601, gnl|Hg17|chr7 (72944923-72945738)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	3-422, gnl\|bosTau2\|chr25 (29142917-29142486)
	3-422, gnl\|Hg17\|chr7 (72944448-72944919)
	3-422, gnl\|Mm7\|chr5 (133658252-133657848)

	455-601, gnl\|bosTau2\|chr25 (29142481-29142336)
	455-601, gnl\|Hg17\|chr7 (72944923-72945738)