Non-Coding RNA Search

rese17c_e15.y1

Sequence:


               
               TACTGATCTTCAACTTCGGACAGCTGCCCTTGGCGCTGATGACATGGGTCCCCATGTTCC
TGTCCACTCTGCTGGTTCCCTACCAGACCCTGCGGCTGTGGGCAAGGCCCCAGGCCGGAG
GGGCCAGGATGCTGCGGGTGGCCCTGGGCTGCGTGCTGCTGGCCGCCCACACTGCGGTGC
TAGGCATCCTCCCGGTCCACGTAGCTGTGGAGTATCAGCTCCCCCCGGCATCGCGCTGTG
TCCTAGTCTTTGAGCAGGTCAGGTTTCTGATGAAAAGCTACTCCTTCCTGAGAGAGACGG
TACCTGGGACGCTTGGCACGGGAAGAGGTGAGGGCGTCCGGACCCCCAGTTTCTCCAGCT
ACCTCTATTTCCTCTTCTGCCCCACTCTCATCTACAGGGAGACTTACCCCAGGACACCCA
ACGTCAGGTGGAATTATGTGGCCAAGAACTTTGCCCAGGCCCTGGGCTGCGTGCTCTATG
CCTGCTTCATCCTGGGCCGCCTCTGCGTTCCTGTTTTTGCCAACATGAGCCGGGAGCCCT
TCAGCACTCGTGCCCTGGTGCTCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTGATCTTCAACTTCGGACAGCTGCCCTTGGCGCTGATGACATGGGTCCCCATGTTCC
TGTCCACTCTGCTGGTTCCCTACCAGACCCTGCGGCTGTGGGCAAGGCCCCAGGCCGGAG
GGGCCAGGATGCTGCGGGTGGCCCTGGGCTGCGTGCTGCTGGCCGCCCACACTGCGGTGC
TAGGCATCCTCCCGGTCCACGTAGCTGTGGAGTATCAGCTCCCCCCGGCATCGCGCTGTG
TCCTAGTCTTTGAGCAGGTCAGGTTTCTGATGAAAAGCTACTCCTTCCTGAGAGAGACGG
TACCTGGGACGCTTGGCACGGGAAGAGGTGAGGGCGTCCGGACCCCCAGTTTCTCCAGCT
ACCTCTATTTCCTCTTCTGCCCCACTCTCATCTACAGGGAGACTTACCCCAGGACACCCA
ACGTCAGGTGGAATTATGTGGCCAAGAACTTTGCCCAGGCCCTGGGCTGCGTGCTCTATG
CCTGCTTCATCCTGGGCCGCCTCTGCGTTCCTGTTTTTGCCAACATGAGCCGGGAGCCCT
TCAGCACTCGTGCCCTGGTGCTCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61868800|ref|XP_591251.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61868800|ref|XP_591251.1|

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-264, gnl|bosTau2|chr5 (20545120-20545382)
               

               
               1-264, gnl|canFam2|chr27 (5063096-5062801)
               

               
               1-264, gnl|danRer3|chrUn (40323375-40323667)
               

               
               1-264, gnl|dasNov1|scaffold_104944 (7880-7581)
               

               
               1-264, gnl|fr1|chrUn (206141428-206141733)
               

               
               1-264, gnl|hg17|chr12 (51795426-51795713)
               

               
               1-264, gnl|Hg17|chr12 (51795461-51795724)
               

               
               1-264, gnl|loxAfr1|scaffold_78338 (443-144)
               

               
               1-264, gnl|mm7|chr15 (102142954-102143252)
               

               
               1-264, gnl|Mm7|chr15 (102142989-102143251)
               

               
               1-264, gnl|oryCun1|scaffold_149656 (1073-774)
               

               
               1-264, gnl|panTro1|chr10 (53028641-53028940)
               

               
               1-264, gnl|rheMac2|chr11 (50168776-50169074)
               

               
               1-264, gnl|rn3|chr7 (140974274-140974572)
               

               
               1-264, gnl|tetNig1|chr11 (2600489-2600193)
               


               
               434-566, gnl|bosTau2|chr5 (20547156-20547288)
               

               
               434-566, gnl|Hg17|chr12 (51799150-51799282)
               

               
               434-566, gnl|Mm7|chr15 (102144847-102144978)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-264, gnl|bosTau2|chr5 (20545120-20545382)
               

               
               1-264, gnl|canFam2|chr27 (5063096-5062801)
               

               
               1-264, gnl|danRer3|chrUn (40323375-40323667)
               

               
               1-264, gnl|dasNov1|scaffold_104944 (7880-7581)
               

               
               1-264, gnl|fr1|chrUn (206141428-206141733)
               

               
               1-264, gnl|hg17|chr12 (51795426-51795713)
               

               
               1-264, gnl|Hg17|chr12 (51795461-51795724)
               

               
               1-264, gnl|loxAfr1|scaffold_78338 (443-144)
               

               
               1-264, gnl|mm7|chr15 (102142954-102143252)
               

               
               1-264, gnl|Mm7|chr15 (102142989-102143251)
               

               
               1-264, gnl|oryCun1|scaffold_149656 (1073-774)
               

               
               1-264, gnl|panTro1|chr10 (53028641-53028940)
               

               
               1-264, gnl|rheMac2|chr11 (50168776-50169074)
               

               
               1-264, gnl|rn3|chr7 (140974274-140974572)
               

               
               1-264, gnl|tetNig1|chr11 (2600489-2600193)
               


               
               434-566, gnl|bosTau2|chr5 (20547156-20547288)
               

               
               434-566, gnl|Hg17|chr12 (51799150-51799282)
               

               
               434-566, gnl|Mm7|chr15 (102144847-102144978)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	1-264, gnl\|bosTau2\|chr5 (20545120-20545382)
	1-264, gnl\|canFam2\|chr27 (5063096-5062801)
	1-264, gnl\|danRer3\|chrUn (40323375-40323667)
	1-264, gnl\|dasNov1\|scaffold_104944 (7880-7581)
	1-264, gnl\|fr1\|chrUn (206141428-206141733)
	1-264, gnl\|hg17\|chr12 (51795426-51795713)
	1-264, gnl\|Hg17\|chr12 (51795461-51795724)
	1-264, gnl\|loxAfr1\|scaffold_78338 (443-144)
	1-264, gnl\|mm7\|chr15 (102142954-102143252)
	1-264, gnl\|Mm7\|chr15 (102142989-102143251)
	1-264, gnl\|oryCun1\|scaffold_149656 (1073-774)
	1-264, gnl\|panTro1\|chr10 (53028641-53028940)
	1-264, gnl\|rheMac2\|chr11 (50168776-50169074)
	1-264, gnl\|rn3\|chr7 (140974274-140974572)
	1-264, gnl\|tetNig1\|chr11 (2600489-2600193)

	434-566, gnl\|bosTau2\|chr5 (20547156-20547288)
	434-566, gnl\|Hg17\|chr12 (51799150-51799282)
	434-566, gnl\|Mm7\|chr15 (102144847-102144978)