Non-Coding RNA Search

rese18c_j11.y1

Sequence:


               
               AGCATCTCAATTTCTTCTCCATTCAGCCCCAGTGCCCTCCTTGCCCCTCACTCTCCATAC
CCCAGGGACCCACCAGCAGGGAGCAGACGGCAGCTAATTTGGGTACTACTTAAGGGTTCC
CCCATTCTGGCCCCCTTCCGCTCCCTCCCCCAACTCTTTCTCTCTGGAGCTGTTTTCTCC
CAAGAGGCTGCAGCACCCAAGGTTGGTACCCTTCCTAACCTATGACACCAGGGCTCACCT
CCTCTTTAGGAGATGGGGGCCATCAGATCATCCGATCACATGGCAGCCTACCATTTCTAG
ACACTTTCTCCCGTTAAAACAATAAAAAATGTTTTCTCCTTAGCCTCAAGCTATCAGTCT
CTCTACTTCCCCTAAAGGGGAAGAGGGGGAAAAAAAGTTGCAGTATGAAAATTCCCCTCC
TCCCAATGTTAAGCTATTGCCATGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCATCTCAATTTCTTCTCCATTCAGCCCCAGTGCCCTCCTTGCCCCTCACTCTCCATAC
CCCAGGGACCCACCAGCAGGGAGCAGACGGCAGCTAATTTGGGTACTACTTAAGGGTTCC
CCCATTCTGGCCCCCTTCCGCTCCCTCCCCCAACTCTTTCTCTCTGGAGCTGTTTTCTCC
CAAGAGGCTGCAGCACCCAAGGTTGGTACCCTTCCTAACCTATGACACCAGGGCTCACCT
CCTCTTTAGGAGATGGGGGCCATCAGATCATCCGATCACATGGCAGCCTACCATTTCTAG
ACACTTTCTCCCGTTAAAACAATAAAAAATGTTTTCTCCTTAGCCTCAAGCTATCAGTCT
CTCTACTTCCCCTAAAGGGGAAGAGGGGGAAAAAAAGTTGCAGTATGAAAATTCCCCTCC
TCCCAATGTTAAGCTATTGCCATGCCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-349, - strand, RNAz p=0.863027
               

               
               198-303, - strand, RNAz p=0.994161

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-349, - strand, RNAz p=0.863027
               

               
               198-303, - strand, RNAz p=0.994161

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-444, gnl|bosTau2|chr18 (38236898-38237338)
               

               
               1-444, gnl|canFam2|chr1 (112769273-112769697)
               

               
               1-444, gnl|dasNov1|scaffold_236734 (961-531)
               

               
               1-444, gnl|hg17|chr17 (24200422-24200835)
               

               
               1-444, gnl|Hg17|chr19 (50906537-50906071)
               

               
               1-444, gnl|loxAfr1|scaffold_4240 (47623-47217)
               

               
               1-444, gnl|mm7|chr7 (16819784-16820167)
               

               
               1-444, gnl|Mm7|chr7 (16819909-16820268)
               

               
               1-444, gnl|panTro1|chr19 (27546642-27547054)
               

               
               1-444, gnl|rheMac2|chr16 (24062683-24063096)
               

               
               1-444, gnl|rn3|chr1 (78574598-78574973)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-444, gnl|bosTau2|chr18 (38236898-38237338)
               

               
               1-444, gnl|canFam2|chr1 (112769273-112769697)
               

               
               1-444, gnl|dasNov1|scaffold_236734 (961-531)
               

               
               1-444, gnl|hg17|chr17 (24200422-24200835)
               

               
               1-444, gnl|Hg17|chr19 (50906537-50906071)
               

               
               1-444, gnl|loxAfr1|scaffold_4240 (47623-47217)
               

               
               1-444, gnl|mm7|chr7 (16819784-16820167)
               

               
               1-444, gnl|Mm7|chr7 (16819909-16820268)
               

               
               1-444, gnl|panTro1|chr19 (27546642-27547054)
               

               
               1-444, gnl|rheMac2|chr16 (24062683-24063096)
               

               
               1-444, gnl|rn3|chr1 (78574598-78574973)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	1-349, - strand, RNAz p=0.863027
	198-303, - strand, RNAz p=0.994161

	1-444, gnl\|bosTau2\|chr18 (38236898-38237338)
	1-444, gnl\|canFam2\|chr1 (112769273-112769697)
	1-444, gnl\|dasNov1\|scaffold_236734 (961-531)
	1-444, gnl\|hg17\|chr17 (24200422-24200835)
	1-444, gnl\|Hg17\|chr19 (50906537-50906071)
	1-444, gnl\|loxAfr1\|scaffold_4240 (47623-47217)
	1-444, gnl\|mm7\|chr7 (16819784-16820167)
	1-444, gnl\|Mm7\|chr7 (16819909-16820268)
	1-444, gnl\|panTro1\|chr19 (27546642-27547054)
	1-444, gnl\|rheMac2\|chr16 (24062683-24063096)
	1-444, gnl\|rn3\|chr1 (78574598-78574973)