Non-Coding RNA Search

rese22c_n22.y1

Sequence:


               
               AGAAATTACTATGTAGGAACTCTATATATACCTACATAAACATTACCTATATACCTGTAT
AGGTACTCGAGCTTAATAATATTTCCTGAACATCCAGGGGTGCAAGGTGCTCTGCAGCCC
ATACTAGTATCAGATATGGTGGTGAATGTCTCACAAAATTACTTGAATGTAGACTTCTTC
AGGTAAATGTGTTACCTGGAGAAAGGAAGCCACAGGTAGCTCTGATTGTGGCTAAGAAGA
GAAATCTTGTTTTCTCCCAAAAAAGTGGATCATTATGGCATAAAAATCCAGCACCTAGTA
TAGTTTCTTGCCCATAATCAATTCCATTCAATAAATAATTGTTTCTTTAAAAATTGAACC
AGATGTTCCTCTGAACAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAATTACTATGTAGGAACTCTATATATACCTACATAAACATTACCTATATACCTGTAT
AGGTACTCGAGCTTAATAATATTTCCTGAACATCCAGGGGTGCAAGGTGCTCTGCAGCCC
ATACTAGTATCAGATATGGTGGTGAATGTCTCACAAAATTACTTGAATGTAGACTTCTTC
AGGTAAATGTGTTACCTGGAGAAAGGAAGCCACAGGTAGCTCTGATTGTGGCTAAGAAGA
GAAATCTTGTTTTCTCCCAAAAAAGTGGATCATTATGGCATAAAAATCCAGCACCTAGTA
TAGTTTCTTGCCCATAATCAATTCCATTCAATAAATAATTGTTTCTTTAAAAATTGAACC
AGATGTTCCTCTGAACAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               187-331, + strand, RNAz p=0.677146

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               187-331, + strand, RNAz p=0.677146

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               71-387, gnl|bosTau2|chr3 (26022694-26022372)
               

               
               71-387, gnl|canFam2|chr6 (45483375-45483182)
               

               
               71-387, gnl|dasNov1|scaffold_2090 (122838-123020)
               

               
               71-387, gnl|hg17|chr1 (109683158-109683348)
               

               
               71-387, gnl|panTro1|chr1 (108612905-108613095)
               

               
               71-387, gnl|rheMac2|chr1 (112486554-112486744)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-387, gnl|bosTau2|chr3 (26022694-26022372)
               

               
               71-387, gnl|canFam2|chr6 (45483375-45483182)
               

               
               71-387, gnl|dasNov1|scaffold_2090 (122838-123020)
               

               
               71-387, gnl|hg17|chr1 (109683158-109683348)
               

               
               71-387, gnl|panTro1|chr1 (108612905-108613095)
               

               
               71-387, gnl|rheMac2|chr1 (112486554-112486744)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	71-387, gnl\|bosTau2\|chr3 (26022694-26022372)
	71-387, gnl\|canFam2\|chr6 (45483375-45483182)
	71-387, gnl\|dasNov1\|scaffold_2090 (122838-123020)
	71-387, gnl\|hg17\|chr1 (109683158-109683348)
	71-387, gnl\|panTro1\|chr1 (108612905-108613095)
	71-387, gnl\|rheMac2\|chr1 (112486554-112486744)