Non-Coding RNA Search

rese24c_n13.y1

Sequence:


               
               GGCTTACGGTGTGGTCCTGTGGGAGATCTTCTCCTACGGCCTGCAGCCCTACTACGGGAT
GGCCCACGAGGAGGTCATCTACTACGTGCGGGATGGCAACACCCTCTCCTGCCCGGACAA
CTGCCCCCTGGAACTCTACAATCTGATGCGCCTGTGTTGGAGCCAGCTGCCAGCCGACAG
ACCCAGTTTCACCAGCATCCACCGAATCCTGGCACGCATGTGTGAGCGGGCCGAGGGAGG
CCTGAGCGTCTGAGGTCCCAGCCATGCGAAGAGGACCCTCCAGCCTCCTCTCAGGCTCTG
GGAGCCAGAGGCGCCCAACGCCAGGGGCCCCCAAGGGGGCCCAGAGAGGAAAGAATAGTA
GAGGCACGGGTACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTACGGTGTGGTCCTGTGGGAGATCTTCTCCTACGGCCTGCAGCCCTACTACGGGAT
GGCCCACGAGGAGGTCATCTACTACGTGCGGGATGGCAACACCCTCTCCTGCCCGGACAA
CTGCCCCCTGGAACTCTACAATCTGATGCGCCTGTGTTGGAGCCAGCTGCCAGCCGACAG
ACCCAGTTTCACCAGCATCCACCGAATCCTGGCACGCATGTGTGAGCGGGCCGAGGGAGG
CCTGAGCGTCTGAGGTCCCAGCCATGCGAAGAGGACCCTCCAGCCTCCTCTCAGGCTCTG
GGAGCCAGAGGCGCCCAACGCCAGGGGCCCCCAAGGGGGCCCAGAGAGGAAAGAATAGTA
GAGGCACGGGTACC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-119, - strand, RNAz p=0.830782
               

               
               212-374, + strand, RNAz p=0.996063
               

               
               240-359, - strand, RNAz p=0.721501

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.830782
               

               
               212-374, + strand, RNAz p=0.996063
               

               
               240-359, - strand, RNAz p=0.721501

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-374, gnl|bosTau2|chr8 (54292375-54292747)
               

               
               1-374, gnl|canFam2|chr11 (68670136-68670514)
               

               
               1-374, gnl|danRer3|chr10 (5885508-5885877)
               

               
               1-374, gnl|dasNov1|scaffold_1096 (215574-215229)
               

               
               1-374, gnl|echTel1|scaffold_289197 (42643-43042)
               

               
               1-374, gnl|fr1|chrUn (230731643-230732014)
               

               
               1-374, gnl|galGal2|chrZ (32765455-32765854)
               

               
               1-374, gnl|hg17|chr9 (110642427-110642826)
               

               
               1-374, gnl|Hg17|chr9 (110642571-110642943)
               

               
               1-374, gnl|loxAfr1|scaffold_3069 (71068-70669)
               

               
               1-374, gnl|mm7|chr4 (58414706-58415105)
               

               
               1-374, gnl|Mm7|chr4 (58414850-58415220)
               

               
               1-374, gnl|monDom2|scaffold_17 (26359841-26360240)
               

               
               1-374, gnl|oryCun1|scaffold_198669 (4847-4446)
               

               
               1-374, gnl|panTro1|chr11 (95163321-95163720)
               

               
               1-374, gnl|rheMac2|chr15 (25383660-25383261)
               

               
               1-374, gnl|rn3|chr5 (76393202-76393601)
               

               
               1-374, gnl|tetNig1|chrUn_random (53440657-53441021)
               

               
               1-374, gnl|xenTro1|scaffold_153 (1703353-1702956)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-374, gnl|bosTau2|chr8 (54292375-54292747)
               

               
               1-374, gnl|canFam2|chr11 (68670136-68670514)
               

               
               1-374, gnl|danRer3|chr10 (5885508-5885877)
               

               
               1-374, gnl|dasNov1|scaffold_1096 (215574-215229)
               

               
               1-374, gnl|echTel1|scaffold_289197 (42643-43042)
               

               
               1-374, gnl|fr1|chrUn (230731643-230732014)
               

               
               1-374, gnl|galGal2|chrZ (32765455-32765854)
               

               
               1-374, gnl|hg17|chr9 (110642427-110642826)
               

               
               1-374, gnl|Hg17|chr9 (110642571-110642943)
               

               
               1-374, gnl|loxAfr1|scaffold_3069 (71068-70669)
               

               
               1-374, gnl|mm7|chr4 (58414706-58415105)
               

               
               1-374, gnl|Mm7|chr4 (58414850-58415220)
               

               
               1-374, gnl|monDom2|scaffold_17 (26359841-26360240)
               

               
               1-374, gnl|oryCun1|scaffold_198669 (4847-4446)
               

               
               1-374, gnl|panTro1|chr11 (95163321-95163720)
               

               
               1-374, gnl|rheMac2|chr15 (25383660-25383261)
               

               
               1-374, gnl|rn3|chr5 (76393202-76393601)
               

               
               1-374, gnl|tetNig1|chrUn_random (53440657-53441021)
               

               
               1-374, gnl|xenTro1|scaffold_153 (1703353-1702956)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	1-119, - strand, RNAz p=0.830782
	212-374, + strand, RNAz p=0.996063
	240-359, - strand, RNAz p=0.721501

	1-374, gnl\|bosTau2\|chr8 (54292375-54292747)
	1-374, gnl\|canFam2\|chr11 (68670136-68670514)
	1-374, gnl\|danRer3\|chr10 (5885508-5885877)
	1-374, gnl\|dasNov1\|scaffold_1096 (215574-215229)
	1-374, gnl\|echTel1\|scaffold_289197 (42643-43042)
	1-374, gnl\|fr1\|chrUn (230731643-230732014)
	1-374, gnl\|galGal2\|chrZ (32765455-32765854)
	1-374, gnl\|hg17\|chr9 (110642427-110642826)
	1-374, gnl\|Hg17\|chr9 (110642571-110642943)
	1-374, gnl\|loxAfr1\|scaffold_3069 (71068-70669)
	1-374, gnl\|mm7\|chr4 (58414706-58415105)
	1-374, gnl\|Mm7\|chr4 (58414850-58415220)
	1-374, gnl\|monDom2\|scaffold_17 (26359841-26360240)
	1-374, gnl\|oryCun1\|scaffold_198669 (4847-4446)
	1-374, gnl\|panTro1\|chr11 (95163321-95163720)
	1-374, gnl\|rheMac2\|chr15 (25383660-25383261)
	1-374, gnl\|rn3\|chr5 (76393202-76393601)
	1-374, gnl\|tetNig1\|chrUn_random (53440657-53441021)
	1-374, gnl\|xenTro1\|scaffold_153 (1703353-1702956)