Non-Coding RNA Search

rese26c_g22.y1

Sequence:


               
               TGCAATCGCTATTTGCCCACAGATACTCTGCTCAACCATATGTTAATTCATGGTCTGTCT
TGTCCATATTGCCGTTCAACTTTCAATGACGTGGAAAAGATGGCGGCACACATGCGGATG
GTTCACATTGACGAAGAGATGGGACCCAAAACAGATTCCACGCTGAGTTTTGATTTGACA
TTGCAGCAGGGTAGTCACACTAACATCCATCTCCTGGTAACCACATACAACCTGAGAGAT
GCCCCCGCCGAGTCTGTTGCTTACCATGCCCAAAACAACCCTCCAGTCCCTCCAAAGCCA
CAGCCAAAAGTTCAGGAAAAGGCAGATATCCCTGTTAAAAGTTCACCTCAAGCTGCAGTG
CCCTATAAAAAAGATGTCGGGAAAACCCTTTGCCCTCTTTGCTTTTCAATCCTCAAAGGA
CCCATATCCGATGCACTTGCACATCACTTACGAGAAAGACACCAAGTGATTCAGACCGTT
CACCCGGTGGAGAAGAAGCTCACCTACAAATGCATCCACTGCCTTGGTGTGTATACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAATCGCTATTTGCCCACAGATACTCTGCTCAACCATATGTTAATTCATGGTCTGTCT
TGTCCATATTGCCGTTCAACTTTCAATGACGTGGAAAAGATGGCGGCACACATGCGGATG
GTTCACATTGACGAAGAGATGGGACCCAAAACAGATTCCACGCTGAGTTTTGATTTGACA
TTGCAGCAGGGTAGTCACACTAACATCCATCTCCTGGTAACCACATACAACCTGAGAGAT
GCCCCCGCCGAGTCTGTTGCTTACCATGCCCAAAACAACCCTCCAGTCCCTCCAAAGCCA
CAGCCAAAAGTTCAGGAAAAGGCAGATATCCCTGTTAAAAGTTCACCTCAAGCTGCAGTG
CCCTATAAAAAAGATGTCGGGAAAACCCTTTGCCCTCTTTGCTTTTCAATCCTCAAAGGA
CCCATATCCGATGCACTTGCACATCACTTACGAGAAAGACACCAAGTGATTCAGACCGTT
CACCCGGTGGAGAAGAAGCTCACCTACAAATGCATCCACTGCCTTGGTGTGTATACC

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               1-537, gnl|bosTau2|chr13 (59140937-59141473)
               

               
               1-537, gnl|canFam2|chr24 (40196783-40197964)
               

               
               1-537, gnl|danRer3|chr23 (23007945-23006738)
               

               
               1-537, gnl|dasNov1|scaffold_32855 (3779-4960)
               

               
               1-537, gnl|echTel1|scaffold_288267 (55947-54766)
               

               
               1-537, gnl|fr1|chrUn (319033791-319035035)
               

               
               1-537, gnl|galGal2|chr20 (13036685-13035506)
               

               
               1-537, gnl|hg17|chr20 (48942127-48943308)
               

               
               1-537, gnl|Hg17|chr20 (48943178-48942642)
               

               
               1-537, gnl|loxAfr1|scaffold_29565 (10403-9225)
               

               
               1-537, gnl|mm7|chr2 (167975500-167976681)
               

               
               1-537, gnl|Mm7|chr2 (167976551-167976015)
               

               
               1-537, gnl|monDom2|scaffold_1 (162796825-162798006)
               

               
               1-537, gnl|oryCun1|scaffold_204453 (17466-18647)
               

               
               1-537, gnl|panTro1|chr21 (51680759-51681940)
               

               
               1-537, gnl|rheMac2|chr10 (13569355-13568174)
               

               
               1-537, gnl|rn3|chr3 (159254253-159255434)
               

               
               1-537, gnl|tetNig1|chrUn_random (94643246-94644471)
               

               
               1-537, gnl|xenTro1|scaffold_165 (1354240-1355436)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-537, gnl|bosTau2|chr13 (59140937-59141473)
               

               
               1-537, gnl|canFam2|chr24 (40196783-40197964)
               

               
               1-537, gnl|danRer3|chr23 (23007945-23006738)
               

               
               1-537, gnl|dasNov1|scaffold_32855 (3779-4960)
               

               
               1-537, gnl|echTel1|scaffold_288267 (55947-54766)
               

               
               1-537, gnl|fr1|chrUn (319033791-319035035)
               

               
               1-537, gnl|galGal2|chr20 (13036685-13035506)
               

               
               1-537, gnl|hg17|chr20 (48942127-48943308)
               

               
               1-537, gnl|Hg17|chr20 (48943178-48942642)
               

               
               1-537, gnl|loxAfr1|scaffold_29565 (10403-9225)
               

               
               1-537, gnl|mm7|chr2 (167975500-167976681)
               

               
               1-537, gnl|Mm7|chr2 (167976551-167976015)
               

               
               1-537, gnl|monDom2|scaffold_1 (162796825-162798006)
               

               
               1-537, gnl|oryCun1|scaffold_204453 (17466-18647)
               

               
               1-537, gnl|panTro1|chr21 (51680759-51681940)
               

               
               1-537, gnl|rheMac2|chr10 (13569355-13568174)
               

               
               1-537, gnl|rn3|chr3 (159254253-159255434)
               

               
               1-537, gnl|tetNig1|chrUn_random (94643246-94644471)
               

               
               1-537, gnl|xenTro1|scaffold_165 (1354240-1355436)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ese (0.126502)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	1-537, gnl\|bosTau2\|chr13 (59140937-59141473)
	1-537, gnl\|canFam2\|chr24 (40196783-40197964)
	1-537, gnl\|danRer3\|chr23 (23007945-23006738)
	1-537, gnl\|dasNov1\|scaffold_32855 (3779-4960)
	1-537, gnl\|echTel1\|scaffold_288267 (55947-54766)
	1-537, gnl\|fr1\|chrUn (319033791-319035035)
	1-537, gnl\|galGal2\|chr20 (13036685-13035506)
	1-537, gnl\|hg17\|chr20 (48942127-48943308)
	1-537, gnl\|Hg17\|chr20 (48943178-48942642)
	1-537, gnl\|loxAfr1\|scaffold_29565 (10403-9225)
	1-537, gnl\|mm7\|chr2 (167975500-167976681)
	1-537, gnl\|Mm7\|chr2 (167976551-167976015)
	1-537, gnl\|monDom2\|scaffold_1 (162796825-162798006)
	1-537, gnl\|oryCun1\|scaffold_204453 (17466-18647)
	1-537, gnl\|panTro1\|chr21 (51680759-51681940)
	1-537, gnl\|rheMac2\|chr10 (13569355-13568174)
	1-537, gnl\|rn3\|chr3 (159254253-159255434)
	1-537, gnl\|tetNig1\|chrUn_random (94643246-94644471)
	1-537, gnl\|xenTro1\|scaffold_165 (1354240-1355436)