Non-Coding RNA Search

rese30c_p7.y1

Sequence:


               
               CATTATTTCACTTGTCCCGCTCTCCTTCATATCCAAAAAAGAGGGGGCTCACCGTCGAGA
AGTGGTCGGTGTTGTAATTTAAAGCAGAGCCCCTTCGCTAGGCCTTGCAGGCGTCGCGGC
GCGGAGAAGCCAGCTCTCCCTTGGCAGTGATTTCGGAAATGTGTCAAGGCATGTGAGCGT
GGAGGCTACCAGGGTGATGCCGCTGAGGGGTGCCTGGACCTGGCTCTGGCCTCGGAGTAA
GGGTGGGGGAGTCTTTCAGCCAAAGTTGTCAGTCGCTTCGACCCCCTACTCCGGCCCGCC
CACCAAGGTTCGCGGACGGGAGCTGCAGAGAAGGCAAGCCAGGCAATTCCAAAGGCGAAA
ACGCAGCCAACTGGCTCACTGCAAAGAGCGGCCGGAAGAAGCGCTGCCCCTACACCAAGC
ACCAGACGCTGGAGCTGGAGAAGGAGTTTCTGTTCAACATGTACCTTACTCGAGAGCGGC
GCCTAGAGATCAGCCGCAGCGTCCACCTCACGGACAGACAAGTTAAAATCTGGTTTCAGA
ACCGCAGGATGAAACTGAAGAAAATGAACCGAGAAAACCGGATCCGGGAGCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTATTTCACTTGTCCCGCTCTCCTTCATATCCAAAAAAGAGGGGGCTCACCGTCGAGA
AGTGGTCGGTGTTGTAATTTAAAGCAGAGCCCCTTCGCTAGGCCTTGCAGGCGTCGCGGC
GCGGAGAAGCCAGCTCTCCCTTGGCAGTGATTTCGGAAATGTGTCAAGGCATGTGAGCGT
GGAGGCTACCAGGGTGATGCCGCTGAGGGGTGCCTGGACCTGGCTCTGGCCTCGGAGTAA
GGGTGGGGGAGTCTTTCAGCCAAAGTTGTCAGTCGCTTCGACCCCCTACTCCGGCCCGCC
CACCAAGGTTCGCGGACGGGAGCTGCAGAGAAGGCAAGCCAGGCAATTCCAAAGGCGAAA
ACGCAGCCAACTGGCTCACTGCAAAGAGCGGCCGGAAGAAGCGCTGCCCCTACACCAAGC
ACCAGACGCTGGAGCTGGAGAAGGAGTTTCTGTTCAACATGTACCTTACTCGAGAGCGGC
GCCTAGAGATCAGCCGCAGCGTCCACCTCACGGACAGACAAGTTAAAATCTGGTTTCAGA
ACCGCAGGATGAAACTGAAGAAAATGAACCGAGAAAACCGGATCCGGGAGCTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|184307|gb|AAA36006.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|184307|gb|AAA36006.1|

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               3-169, gnl|bosTau2|chr4 (40162533-40162701)
               

               
               3-169, gnl|canFam2|chr14 (43309684-43310068)
               

               
               3-169, gnl|dasNov1|scaffold_49325 (7524-7901)
               

               
               3-169, gnl|echTel1|scaffold_321013 (28447-28070)
               

               
               3-169, gnl|hg17|chr7 (26992316-26992680)
               

               
               3-169, gnl|Hg17|chr7 (26992668-26992504)
               

               
               3-169, gnl|loxAfr1|scaffold_4768 (85290-85644)
               

               
               3-169, gnl|mm7|chr6 (52203447-52203825)
               

               
               3-169, gnl|Mm7|chr6 (52203813-52203646)
               

               
               3-169, gnl|monDom2|scaffold_57 (894959-894607)
               

               
               3-169, gnl|oryCun1|scaffold_200437 (130467-130116)
               

               
               3-169, gnl|panTro1|chr6 (28122377-28122741)
               

               
               3-169, gnl|rheMac2|chr3 (99045776-99045412)
               

               
               3-169, gnl|rn3|chr4 (80819029-80819409)
               


               
               338-594, gnl|bosTau2|chr4 (40170808-40171064)
               

               
               338-594, gnl|Hg17|chr7 (26985037-26984781)
               

               
               338-594, gnl|Mm7|chr6 (52196154-52195898)
               


               
               366-568, gnl|bosTau2|chr19 (31239656-31239454)
               

               
               366-568, gnl|Hg17|chr17 (44055485-44055283)
               

               
               366-568, gnl|Mm7|chr11 (96383674-96383876)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-169, gnl|bosTau2|chr4 (40162533-40162701)
               

               
               3-169, gnl|canFam2|chr14 (43309684-43310068)
               

               
               3-169, gnl|dasNov1|scaffold_49325 (7524-7901)
               

               
               3-169, gnl|echTel1|scaffold_321013 (28447-28070)
               

               
               3-169, gnl|hg17|chr7 (26992316-26992680)
               

               
               3-169, gnl|Hg17|chr7 (26992668-26992504)
               

               
               3-169, gnl|loxAfr1|scaffold_4768 (85290-85644)
               

               
               3-169, gnl|mm7|chr6 (52203447-52203825)
               

               
               3-169, gnl|Mm7|chr6 (52203813-52203646)
               

               
               3-169, gnl|monDom2|scaffold_57 (894959-894607)
               

               
               3-169, gnl|oryCun1|scaffold_200437 (130467-130116)
               

               
               3-169, gnl|panTro1|chr6 (28122377-28122741)
               

               
               3-169, gnl|rheMac2|chr3 (99045776-99045412)
               

               
               3-169, gnl|rn3|chr4 (80819029-80819409)
               


               
               338-594, gnl|bosTau2|chr4 (40170808-40171064)
               

               
               338-594, gnl|Hg17|chr7 (26985037-26984781)
               

               
               338-594, gnl|Mm7|chr6 (52196154-52195898)
               


               
               366-568, gnl|bosTau2|chr19 (31239656-31239454)
               

               
               366-568, gnl|Hg17|chr17 (44055485-44055283)
               

               
               366-568, gnl|Mm7|chr11 (96383674-96383876)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	3-169, gnl\|bosTau2\|chr4 (40162533-40162701)
	3-169, gnl\|canFam2\|chr14 (43309684-43310068)
	3-169, gnl\|dasNov1\|scaffold_49325 (7524-7901)
	3-169, gnl\|echTel1\|scaffold_321013 (28447-28070)
	3-169, gnl\|hg17\|chr7 (26992316-26992680)
	3-169, gnl\|Hg17\|chr7 (26992668-26992504)
	3-169, gnl\|loxAfr1\|scaffold_4768 (85290-85644)
	3-169, gnl\|mm7\|chr6 (52203447-52203825)
	3-169, gnl\|Mm7\|chr6 (52203813-52203646)
	3-169, gnl\|monDom2\|scaffold_57 (894959-894607)
	3-169, gnl\|oryCun1\|scaffold_200437 (130467-130116)
	3-169, gnl\|panTro1\|chr6 (28122377-28122741)
	3-169, gnl\|rheMac2\|chr3 (99045776-99045412)
	3-169, gnl\|rn3\|chr4 (80819029-80819409)

	338-594, gnl\|bosTau2\|chr4 (40170808-40171064)
	338-594, gnl\|Hg17\|chr7 (26985037-26984781)
	338-594, gnl\|Mm7\|chr6 (52196154-52195898)

	366-568, gnl\|bosTau2\|chr19 (31239656-31239454)
	366-568, gnl\|Hg17\|chr17 (44055485-44055283)
	366-568, gnl\|Mm7\|chr11 (96383674-96383876)