rese32c_b9.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCTCCCGCCCCTGCCCCTGACGCTGGCCCTGGGGGCCTTCCTGAATCACCGGAAGAACA AGTTCCAGTGCGGCTTTGGCCTCACCATTGGCTGAGCCCCTGCTGGGCCCCGCCTTCCAC GCCCTTCCTCCTTCAGCCCCACCTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCTCCCGCCCCTGCCCCTGACGCTGGCCCTGGGGGCCTTCCTGAATCACCGGAAGAACA AGTTCCAGTGCGGCTTTGGCCTCACCATTGGCTGAGCCCCTGCTGGGCCCCGCCTTCCAC GCCCTTCCTCCTTCAGCCCCACCTCC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 17-146, - strand, RNAz p=0.994449 | |
| 29-146, - strand, RNAz p=0.991801 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 17-146, - strand, RNAz p=0.994449 | |
| 29-146, - strand, RNAz p=0.991801 |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 1-146, gnl|bosTau2|chr18 (38885246-38885101) | |
| 1-146, gnl|canFam2|chr1 (113421194-113421048) | |
| 1-146, gnl|canFam2|chr1 (113421205-113421048) | |
| 1-146, gnl|canFam2|chr1 (113421194-113421048) | |
| 1-146, gnl|danRer3|chr3 (36532367-36532229) | |
| 1-146, gnl|danRer3|chr3 (36532380-36532229) | |
| 1-146, gnl|danRer3|chr3 (36532370-36532225) | |
| 1-146, gnl|dasNov1|scaffold_93831 (8500-8354) | |
| 1-146, gnl|dasNov1|scaffold_93831 (8511-8354) | |
| 1-146, gnl|dasNov1|scaffold_93831 (8500-8354) | |
| 1-146, gnl|echTel1|scaffold_323177 (2311-2457) | |
| 1-146, gnl|echTel1|scaffold_323177 (2300-2457) | |
| 1-146, gnl|echTel1|scaffold_323177 (2311-2457) | |
| 1-146, gnl|fr1|chrUn (71308245-71308383) | |
| 1-146, gnl|fr1|chrUn (71308238-71308383) | |
| 1-146, gnl|fr1|chrUn (71308242-71308386) | |
| 1-146, gnl|galGal2|chrUn (22379529-22379381) | |
| 1-146, gnl|galGal2|chrUn (22379530-22379386) | |
| 1-146, gnl|hg17|chr19 (50098115-50098271) | |
| 1-146, gnl|Hg17|chr19 (50098172-50098316) | |
| 1-146, gnl|hg17|chr22 (14503628-14503773) | |
| 1-146, gnl|hg17|chr5 (33538855-33539000) | |
| 1-146, gnl|loxAfr1|scaffold_75915 (5262-5408) | |
| 1-146, gnl|loxAfr1|scaffold_75915 (5251-5408) | |
| 1-146, gnl|loxAfr1|scaffold_75915 (5262-5408) | |
| 1-146, gnl|mm7|chr7 (17384231-17384089) | |
| 1-146, gnl|mm7|chr7 (17384245-17384089) | |
| 1-146, gnl|mm7|chr7 (17384231-17384089) | |
| 1-146, gnl|monDom2|scaffold_221 (187519-187375) | |
| 1-146, gnl|monDom2|scaffold_221 (187530-187375) | |
| 1-146, gnl|monDom2|scaffold_221 (187519-187375) | |
| 1-146, gnl|oryCun1|scaffold_187307 (13093-13224) | |
| 1-146, gnl|oryCun1|scaffold_187307 (13082-13224) | |
| 1-146, gnl|oryCun1|scaffold_187307 (13093-13224) | |
| 1-146, gnl|panTro1|chr20 (47238365-47238521) | |
| 1-146, gnl|panTro1|chr23 (14473777-14473922) | |
| 1-146, gnl|panTro1|chr4 (98878910-98879055) | |
| 1-146, gnl|rheMac2|chr19 (51330758-51330900) | |
| 1-146, gnl|rheMac2|chr19 (51330744-51330900) | |
| 1-146, gnl|rheMac2|chr6 (33605543-33605685) | |
| 1-146, gnl|rn3|chr1 (79087145-79087003) | |
| 1-146, gnl|rn3|chr1 (79087159-79087003) | |
| 1-146, gnl|rn3|chr1 (79087145-79087003) | |
| 1-146, gnl|tetNig1|chr8 (595653-595514) | |
| 1-146, gnl|tetNig1|chrUn_random (91395224-91395083) | |
| 1-146, gnl|tetNig1|chrUn_random (91395238-91395083) | |
| 1-146, gnl|xenTro1|scaffold_837 (43797-43942) | |
| 1-146, gnl|xenTro1|scaffold_837 (43802-43942) | |
| 1-146, gnl|xenTro1|scaffold_837 (43797-43942) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-146, gnl|bosTau2|chr18 (38885246-38885101) | |
| 1-146, gnl|canFam2|chr1 (113421194-113421048) | |
| 1-146, gnl|canFam2|chr1 (113421205-113421048) | |
| 1-146, gnl|canFam2|chr1 (113421194-113421048) | |
| 1-146, gnl|danRer3|chr3 (36532367-36532229) | |
| 1-146, gnl|danRer3|chr3 (36532380-36532229) | |
| 1-146, gnl|danRer3|chr3 (36532370-36532225) | |
| 1-146, gnl|dasNov1|scaffold_93831 (8500-8354) | |
| 1-146, gnl|dasNov1|scaffold_93831 (8511-8354) | |
| 1-146, gnl|dasNov1|scaffold_93831 (8500-8354) | |
| 1-146, gnl|echTel1|scaffold_323177 (2311-2457) | |
| 1-146, gnl|echTel1|scaffold_323177 (2300-2457) | |
| 1-146, gnl|echTel1|scaffold_323177 (2311-2457) | |
| 1-146, gnl|fr1|chrUn (71308245-71308383) | |
| 1-146, gnl|fr1|chrUn (71308238-71308383) | |
| 1-146, gnl|fr1|chrUn (71308242-71308386) | |
| 1-146, gnl|galGal2|chrUn (22379529-22379381) | |
| 1-146, gnl|galGal2|chrUn (22379530-22379386) | |
| 1-146, gnl|hg17|chr19 (50098115-50098271) | |
| 1-146, gnl|Hg17|chr19 (50098172-50098316) | |
| 1-146, gnl|hg17|chr22 (14503628-14503773) | |
| 1-146, gnl|hg17|chr5 (33538855-33539000) | |
| 1-146, gnl|loxAfr1|scaffold_75915 (5262-5408) | |
| 1-146, gnl|loxAfr1|scaffold_75915 (5251-5408) | |
| 1-146, gnl|loxAfr1|scaffold_75915 (5262-5408) | |
| 1-146, gnl|mm7|chr7 (17384231-17384089) | |
| 1-146, gnl|mm7|chr7 (17384245-17384089) | |
| 1-146, gnl|mm7|chr7 (17384231-17384089) | |
| 1-146, gnl|monDom2|scaffold_221 (187519-187375) | |
| 1-146, gnl|monDom2|scaffold_221 (187530-187375) | |
| 1-146, gnl|monDom2|scaffold_221 (187519-187375) | |
| 1-146, gnl|oryCun1|scaffold_187307 (13093-13224) | |
| 1-146, gnl|oryCun1|scaffold_187307 (13082-13224) | |
| 1-146, gnl|oryCun1|scaffold_187307 (13093-13224) | |
| 1-146, gnl|panTro1|chr20 (47238365-47238521) | |
| 1-146, gnl|panTro1|chr23 (14473777-14473922) | |
| 1-146, gnl|panTro1|chr4 (98878910-98879055) | |
| 1-146, gnl|rheMac2|chr19 (51330758-51330900) | |
| 1-146, gnl|rheMac2|chr19 (51330744-51330900) | |
| 1-146, gnl|rheMac2|chr6 (33605543-33605685) | |
| 1-146, gnl|rn3|chr1 (79087145-79087003) | |
| 1-146, gnl|rn3|chr1 (79087159-79087003) | |
| 1-146, gnl|rn3|chr1 (79087145-79087003) | |
| 1-146, gnl|tetNig1|chr8 (595653-595514) | |
| 1-146, gnl|tetNig1|chrUn_random (91395224-91395083) | |
| 1-146, gnl|tetNig1|chrUn_random (91395238-91395083) | |
| 1-146, gnl|xenTro1|scaffold_837 (43797-43942) | |
| 1-146, gnl|xenTro1|scaffold_837 (43802-43942) | |
| 1-146, gnl|xenTro1|scaffold_837 (43797-43942) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |