Non-Coding RNA Search

rese32c_l1.y1

Sequence:


               
               CTTTATCTAGCTTCCCCTTACCAAGCCAGTAGTTCCCCTGCCCTAAGTTATCCAGGATGA
GATATAagacaactaggaaccacctgtatagtccagagcccactaaaattattcgagccg
gccaatcctaaactgtttactctgccctacctttccttttccatagaaaccacaataaag
gcttgtgcccTTTTCTCTCACCTTCCTCCTGGCCAACCCTGTACTTCCCCATGTGGTCCT
GCGTGGCATGGCATGCCCCCTCCTCTTGGGAATTGTAAGGAAACTTTTCTTTTAAGGCAG
TTGTCTCCATGTCTCTCATCATACTGAACCTGATTAAAACAAAATCTTAGGTACAAATCA
TACTATGTGGACAGTGGCTACTGTATGGGACAGAACACATCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTATCTAGCTTCCCCTTACCAAGCCAGTAGTTCCCCTGCCCTAAGTTATCCAGGATGA
GATATAagacaactaggaaccacctgtatagtccagagcccactaaaattattcgagccg
gccaatcctaaactgtttactctgccctacctttccttttccatagaaaccacaataaag
gcttgtgcccTTTTCTCTCACCTTCCTCCTGGCCAACCCTGTACTTCCCCATGTGGTCCT
GCGTGGCATGGCATGCCCCCTCCTCTTGGGAATTGTAAGGAAACTTTTCTTTTAAGGCAG
TTGTCTCCATGTCTCTCATCATACTGAACCTGATTAAAACAAAATCTTAGGTACAAATCA
TACTATGTGGACAGTGGCTACTGTATGGGACAGAACACATCTA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-212, - strand, RNAz p=0.993637
               

               
               107-214, - strand, RNAz p=0.993136

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-212, - strand, RNAz p=0.993637
               

               
               107-214, - strand, RNAz p=0.993136

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-403, gnl|bosTau2|chr6 (6968827-6968431)
               

               
               1-403, gnl|canFam2|chr32 (27192128-27192643)
               

               
               1-403, gnl|hg17|chr4 (104161790-104162349)
               

               
               1-403, gnl|Hg17|chr4 (104161966-104162361)
               

               
               1-403, gnl|panTro1|chr3 (120563065-120563624)
               

               
               1-403, gnl|rheMac2|chr5 (95864948-95865487)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-403, gnl|bosTau2|chr6 (6968827-6968431)
               

               
               1-403, gnl|canFam2|chr32 (27192128-27192643)
               

               
               1-403, gnl|hg17|chr4 (104161790-104162349)
               

               
               1-403, gnl|Hg17|chr4 (104161966-104162361)
               

               
               1-403, gnl|panTro1|chr3 (120563065-120563624)
               

               
               1-403, gnl|rheMac2|chr5 (95864948-95865487)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	1-212, - strand, RNAz p=0.993637
	107-214, - strand, RNAz p=0.993136

	1-403, gnl\|bosTau2\|chr6 (6968827-6968431)
	1-403, gnl\|canFam2\|chr32 (27192128-27192643)
	1-403, gnl\|hg17\|chr4 (104161790-104162349)
	1-403, gnl\|Hg17\|chr4 (104161966-104162361)
	1-403, gnl\|panTro1\|chr3 (120563065-120563624)
	1-403, gnl\|rheMac2\|chr5 (95864948-95865487)