Non-Coding RNA Search

rese34c_g12.y1

Sequence:


               
               GGAGAGTGAGAGGTCCGGAAACGGGGTCTCGGGAGCTGGAGTCCAAAAGGAGAAAAGCCT
GATGGGGACTGACATTTGCCAAAAGAACCATGAGGCGGGGTGACATCCCATCCAGGCCCT
TCTGGGACCTTCCAGCACCCAAGAGAGGTATGCACAAAATTTTTTCAGGCAATAGCCCAA
CTCGACCCACCCGACTTTGTAGAGTTAAGAAGCTGAGCTTGTTATGCAGATAATCTATCC
TTGTGCAGCGATATGACCCACCTCTTCCAACTGAGCCCCTTGCAGTCAAGGAAGGGAGAG
GAAAAAAACTTGGGATCCTGCGTGTGGAGGAACCAACACCACCACCCTCGTCAGGAAGTC
AAACTCAAATCTTGGACAGTTCTTTACTCCTTCCCTGTCCCTATTTCTCAGGCAGGTCGC
AGCAGGCCACTCCCACCTTTTTTCCTCTGTTACAGAAGGTCACCAGACCCTCCTGCCTTG
GACTTTCTGAGGTGCTGTTATTCAGAGCAACTATCAAATTCTACCTGTTAAAACATGATG
GATTAGAGGGGGGGGGGAACCCACCAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAGTGAGAGGTCCGGAAACGGGGTCTCGGGAGCTGGAGTCCAAAAGGAGAAAAGCCT
GATGGGGACTGACATTTGCCAAAAGAACCATGAGGCGGGGTGACATCCCATCCAGGCCCT
TCTGGGACCTTCCAGCACCCAAGAGAGGTATGCACAAAATTTTTTCAGGCAATAGCCCAA
CTCGACCCACCCGACTTTGTAGAGTTAAGAAGCTGAGCTTGTTATGCAGATAATCTATCC
TTGTGCAGCGATATGACCCACCTCTTCCAACTGAGCCCCTTGCAGTCAAGGAAGGGAGAG
GAAAAAAACTTGGGATCCTGCGTGTGGAGGAACCAACACCACCACCCTCGTCAGGAAGTC
AAACTCAAATCTTGGACAGTTCTTTACTCCTTCCCTGTCCCTATTTCTCAGGCAGGTCGC
AGCAGGCCACTCCCACCTTTTTTCCTCTGTTACAGAAGGTCACCAGACCCTCCTGCCTTG
GACTTTCTGAGGTGCTGTTATTCAGAGCAACTATCAAATTCTACCTGTTAAAACATGATG
GATTAGAGGGGGGGGGGAACCCACCAGGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               372-477, - strand, RNAz p=0.998808

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               372-477, - strand, RNAz p=0.998808

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               67-548, gnl|bosTau2|chr4 (37142400-37141925)
               

               
               67-548, gnl|Hg17|chr7 (26924093-26924610)
               

               
               67-548, gnl|Mm7|chr6 (52136452-52137034)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-548, gnl|bosTau2|chr4 (37142400-37141925)
               

               
               67-548, gnl|Hg17|chr7 (26924093-26924610)
               

               
               67-548, gnl|Mm7|chr6 (52136452-52137034)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	67-548, gnl\|bosTau2\|chr4 (37142400-37141925)
	67-548, gnl\|Hg17\|chr7 (26924093-26924610)
	67-548, gnl\|Mm7\|chr6 (52136452-52137034)