Non-Coding RNA Search

rese36c_c16.y1

Sequence:


               
               GGGGCCATGATTCAGCAGGTGACCAAGCAGGAGATTCTAGACCTGGCTGAGGCCAGTGTC
CACCCGCCAGACGCGGCCTCCGCCTTAGACGCCCTGCTGTGCGCGGTGACCGAGCTGGGA
GGGGCAGAAGGCCGGGCCGCTGCGGAGGAAAAAGGCAGGGCGGGCCCCAGAGACGTGTTG
GTCCAGCTGCCAGGGCAGGAGGCGGCCCCCGCTGTGGCCCCGCCCACGGCCCCAGAGATC
CACATGTTCCATGATGTGCAGGACGGCCCGGCCGGGGAGCCTGTGGAGGTGCTAACCCAG
GTGGTGCGGCCCTCAGCCGTGATGGCGTCACAGGAGCGCGCCCAGGTGGCCTTCAAGAAG
GTGGTGCAGGGCGTGCTGCAGTTCGCCGTCTGCGACTCGGCAGCGGCCGGCCAGCTCATG
AAGGACGGCGTTACGCAGGTCATTGTGAACGAGGAGGGCACGGTGCACATGCTGGCCCGG
GAAGGCTCCCAGATCATCATGCAGGAAGCCGAGACCCACAGCCAGCACGTGGACCTTGCC
GAGTCCGACGGCGAGATCTCGCAGATCATCGTGACGGAGGAGCTGGTCCAGGCCATGGTC
CAGGAGTCCGGTGGCAATTTTTCTTAGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCCATGATTCAGCAGGTGACCAAGCAGGAGATTCTAGACCTGGCTGAGGCCAGTGTC
CACCCGCCAGACGCGGCCTCCGCCTTAGACGCCCTGCTGTGCGCGGTGACCGAGCTGGGA
GGGGCAGAAGGCCGGGCCGCTGCGGAGGAAAAAGGCAGGGCGGGCCCCAGAGACGTGTTG
GTCCAGCTGCCAGGGCAGGAGGCGGCCCCCGCTGTGGCCCCGCCCACGGCCCCAGAGATC
CACATGTTCCATGATGTGCAGGACGGCCCGGCCGGGGAGCCTGTGGAGGTGCTAACCCAG
GTGGTGCGGCCCTCAGCCGTGATGGCGTCACAGGAGCGCGCCCAGGTGGCCTTCAAGAAG
GTGGTGCAGGGCGTGCTGCAGTTCGCCGTCTGCGACTCGGCAGCGGCCGGCCAGCTCATG
AAGGACGGCGTTACGCAGGTCATTGTGAACGAGGAGGGCACGGTGCACATGCTGGCCCGG
GAAGGCTCCCAGATCATCATGCAGGAAGCCGAGACCCACAGCCAGCACGTGGACCTTGCC
GAGTCCGACGGCGAGATCTCGCAGATCATCGTGACGGAGGAGCTGGTCCAGGCCATGGTC
CAGGAGTCCGGTGGCAATTTTTCTTAGGGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10435978|dbj|BAB14716.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10435978|dbj|BAB14716.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-239, + strand, RNAz p=0.549727

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, + strand, RNAz p=0.549727

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB051490, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB051490, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-631, gnl|bosTau2|chr24 (3718828-3718207)
               

               
               1-631, gnl|Hg17|chr18 (70904546-70905164)
               

               
               1-631, gnl|Mm7|chr18 (84558762-84558123)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-631, gnl|bosTau2|chr24 (3718828-3718207)
               

               
               1-631, gnl|Hg17|chr18 (70904546-70905164)
               

               
               1-631, gnl|Mm7|chr18 (84558762-84558123)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	1-631, gnl\|bosTau2\|chr24 (3718828-3718207)
	1-631, gnl\|Hg17\|chr18 (70904546-70905164)
	1-631, gnl\|Mm7\|chr18 (84558762-84558123)