Non-Coding RNA Search

rese36c_j2.y1

Sequence:


               
               CTGACAGTGGTTGCCTTCAGCCAGGCAGCATCTTAGTTGCTTTCCCGTGACGGGAAGCCA
GCCGGTGCTTACACACTTGTTTTTAGACGGAGTGTTACCAGCCACGGTTCTGACTATAGT
TCTCCTTAGATCAGCACATTCCCTGTGTCTGCATTATTTTTACAGCATGAGTGCAGGTGA
TCCCCAGGACCACCTTTCCCACCAAACATTATCCCATCAGCCTGGAATGGATCATAGGAG
GAGGTTTTCGGTCACACGCTCAATTTCTTGAATTGATTTCCCCGACTTGGATGATAAGCA
AGAGAGGCTCTGAAATTCTCATTCCTCTTTCTTACATAAACAGGAAATGGAGAGGGGAGA
TTCTGACTTTGGTACAGGGCAAAATTAGTCTTTCTGGTTTAAACACGAATCCCGACGACT
CCCCTTCTGCAAGGTCCATGCTGCGATTCCCTGGCACGTCTTCTTTGTCGTCACCTCCTT
GTGACACGCTGCACCCTCCATTCACTGGCCCTGGCATATGGACCAGGGCAGGACGCCCCT
CCATCCCACCCTCACCGTCTCTCCTTCTAGCCTTCTCCCTATGGGGTGGGGGAGGGGAAG
GCCCCAAATCCTTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACAGTGGTTGCCTTCAGCCAGGCAGCATCTTAGTTGCTTTCCCGTGACGGGAAGCCA
GCCGGTGCTTACACACTTGTTTTTAGACGGAGTGTTACCAGCCACGGTTCTGACTATAGT
TCTCCTTAGATCAGCACATTCCCTGTGTCTGCATTATTTTTACAGCATGAGTGCAGGTGA
TCCCCAGGACCACCTTTCCCACCAAACATTATCCCATCAGCCTGGAATGGATCATAGGAG
GAGGTTTTCGGTCACACGCTCAATTTCTTGAATTGATTTCCCCGACTTGGATGATAAGCA
AGAGAGGCTCTGAAATTCTCATTCCTCTTTCTTACATAAACAGGAAATGGAGAGGGGAGA
TTCTGACTTTGGTACAGGGCAAAATTAGTCTTTCTGGTTTAAACACGAATCCCGACGACT
CCCCTTCTGCAAGGTCCATGCTGCGATTCCCTGGCACGTCTTCTTTGTCGTCACCTCCTT
GTGACACGCTGCACCCTCCATTCACTGGCCCTGGCATATGGACCAGGGCAGGACGCCCCT
CCATCCCACCCTCACCGTCTCTCCTTCTAGCCTTCTCCCTATGGGGTGGGGGAGGGGAAG
GCCCCAAATCCTTAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               515-620, + strand, RNAz p=0.992867

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               515-620, + strand, RNAz p=0.992867

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-620, gnl|bosTau2|chr26 (22519512-22520143)
               

               
               1-620, gnl|Hg17|chr10 (114913714-114914352)
               

               
               1-620, gnl|Mm7|chr19 (55844860-55845458)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-620, gnl|bosTau2|chr26 (22519512-22520143)
               

               
               1-620, gnl|Hg17|chr10 (114913714-114914352)
               

               
               1-620, gnl|Mm7|chr19 (55844860-55845458)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ese (0.126502)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)

	1-620, gnl\|bosTau2\|chr26 (22519512-22520143)
	1-620, gnl\|Hg17\|chr10 (114913714-114914352)
	1-620, gnl\|Mm7\|chr19 (55844860-55845458)