rese39c_j13.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCGAGGGCCTCACCGCCGTGTCGGGGAGCCCGGACCTTGCCAACCTCACACTTCGCGG CCTCGACTCCCAGCTCATCTCCCTCAAGCGCCAGGTGCAAAGCATGAAGCAGACCAACAG CAGCCTCCGCCAAGCCCTGGAGGGTGGCATTGATCCACTCCGCCCCCCAGAGGCCAACAC CAAGTTCAACTCCCGCTGGACCACGGATGAGCAGCTTTGGGCCGTACAAGCCATCCGTAG GTATGGCAAAGACTTCGGGGCTATTGCCGAGGTGATTGGCAACAAGACTCTGACCCAGGT GAAGACCTTCTTTGTGAGCTACCGGCGCCGCTTCAATCTGGAGGAGGTGCTGCAGGAATG GGAGGCCGAGCAGGATGGGGCCCCTGGAGCCCCGGTCCCTGGGGAGGAGGCTCGGAGAGG GGCTCCCTTGCCAGCCCCAGCCCTAGAGGAAGACGACGAGGTCCAGATTACATCTGTCTC AACATCGGGGCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCGAGGGCCTCACCGCCGTGTCGGGGAGCCCGGACCTTGCCAACCTCACACTTCGCGG CCTCGACTCCCAGCTCATCTCCCTCAAGCGCCAGGTGCAAAGCATGAAGCAGACCAACAG CAGCCTCCGCCAAGCCCTGGAGGGTGGCATTGATCCACTCCGCCCCCCAGAGGCCAACAC CAAGTTCAACTCCCGCTGGACCACGGATGAGCAGCTTTGGGCCGTACAAGCCATCCGTAG GTATGGCAAAGACTTCGGGGCTATTGCCGAGGTGATTGGCAACAAGACTCTGACCCAGGT GAAGACCTTCTTTGTGAGCTACCGGCGCCGCTTCAATCTGGAGGAGGTGCTGCAGGAATG GGAGGCCGAGCAGGATGGGGCCCCTGGAGCCCCGGTCCCTGGGGAGGAGGCTCGGAGAGG GGCTCCCTTGCCAGCCCCAGCCCTAGAGGAAGACGACGAGGTCCAGATTACATCTGTCTC AACATCGGGGCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 331-462, + strand, RNAz p=0.99296 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 331-462, + strand, RNAz p=0.99296 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 215-462, gnl|bosTau2|chr29 (30629586-30629339) | |
| 215-462, gnl|canFam2|chr18 (56125996-56126187) | |
| 215-462, gnl|canFam2|chr18 (56126137-56125979) | |
| 215-462, gnl|danRer3|chr16 (30404630-30404857) | |
| 215-462, gnl|danRer3|chr16 (30404771-30404614) | |
| 215-462, gnl|dasNov1|scaffold_59073 (1974-2174) | |
| 215-462, gnl|dasNov1|scaffold_59073 (2115-1957) | |
| 215-462, gnl|echTel1|scaffold_263050 (3424-3615) | |
| 215-462, gnl|echTel1|scaffold_263050 (3565-3407) | |
| 215-462, gnl|fr1|chrUn (224912446-224912646) | |
| 215-462, gnl|fr1|chrUn (224912587-224912423) | |
| 215-462, gnl|hg17|chr11 (63436442-63436600) | |
| 215-462, gnl|Hg17|chr11 (63436598-63436351) | |
| 215-462, gnl|hg17|chr12 (93037081-93037270) | |
| 215-462, gnl|loxAfr1|scaffold_28969 (3664-3855) | |
| 215-462, gnl|loxAfr1|scaffold_28969 (3805-3647) | |
| 215-462, gnl|mm7|chr19 (7093882-7094073) | |
| 215-462, gnl|mm7|chr19 (7094023-7093862) | |
| 215-462, gnl|Mm7|chr19 (7093862-7094112) | |
| 215-462, gnl|oryCun1|scaffold_146409 (627-818) | |
| 215-462, gnl|oryCun1|scaffold_146409 (768-609) | |
| 215-462, gnl|panTro1|chr9 (64477311-64477120) | |
| 215-462, gnl|panTro1|chr9 (64477170-64477328) | |
| 215-462, gnl|rheMac2|chr11 (95371171-95371362) | |
| 215-462, gnl|rheMac2|chr14 (10533843-10533685) | |
| 215-462, gnl|rn3|chr1 (210114700-210114541) | |
| 215-462, gnl|rn3|chr15 (21157754-21157945) | |
| 215-462, gnl|tetNig1|chrUn_random (21131167-21131424) | |
| 215-462, gnl|tetNig1|chrUn_random (21131380-21131149) | |
| 215-462, gnl|xenTro1|scaffold_1034 (276056-275871) | |
| 215-462, gnl|xenTro1|scaffold_1034 (275915-276065) | |
| 234-372, gnl|bosTau2|chr16 (54971437-54971575) | |
| 234-372, gnl|canFam2|chr7 (12726203-12726354) | |
| 234-372, gnl|danRer3|chr22 (48594132-48594278) | |
| 234-372, gnl|dasNov1|scaffold_19650 (62183-62334) | |
| 234-372, gnl|echTel1|scaffold_294086 (13896-13738) | |
| 234-372, gnl|fr1|chrUn (224912442-224912589) | |
| 234-372, gnl|galGal2|chr3 (18635241-18635090) | |
| 234-372, gnl|hg17|chr1 (207874450-207874601) | |
| 234-372, gnl|Hg17|chr1 (207874460-207874598) | |
| 234-372, gnl|loxAfr1|scaffold_10777 (40044-40195) | |
| 234-372, gnl|mm7|chr1 (191654721-191654570) | |
| 234-372, gnl|Mm7|chr1 (191654709-191654571) | |
| 234-372, gnl|monDom2|scaffold_13 (14992965-14993116) | |
| 234-372, gnl|oryCun1|scaffold_191303 (51299-51148) | |
| 234-372, gnl|panTro1|chr1 (191504560-191504711) | |
| 234-372, gnl|rheMac2|chr1 (159097945-159097794) | |
| 234-372, gnl|rn3|chr1 (210114551-210114702) | |
| 234-372, gnl|tetNig1|chrUn_random (47775521-47775375) | |
| 234-372, gnl|xenTro1|scaffold_30 (53300-53451) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 215-462, gnl|bosTau2|chr29 (30629586-30629339) | |
| 215-462, gnl|canFam2|chr18 (56125996-56126187) | |
| 215-462, gnl|canFam2|chr18 (56126137-56125979) | |
| 215-462, gnl|danRer3|chr16 (30404630-30404857) | |
| 215-462, gnl|danRer3|chr16 (30404771-30404614) | |
| 215-462, gnl|dasNov1|scaffold_59073 (1974-2174) | |
| 215-462, gnl|dasNov1|scaffold_59073 (2115-1957) | |
| 215-462, gnl|echTel1|scaffold_263050 (3424-3615) | |
| 215-462, gnl|echTel1|scaffold_263050 (3565-3407) | |
| 215-462, gnl|fr1|chrUn (224912446-224912646) | |
| 215-462, gnl|fr1|chrUn (224912587-224912423) | |
| 215-462, gnl|hg17|chr11 (63436442-63436600) | |
| 215-462, gnl|Hg17|chr11 (63436598-63436351) | |
| 215-462, gnl|hg17|chr12 (93037081-93037270) | |
| 215-462, gnl|loxAfr1|scaffold_28969 (3664-3855) | |
| 215-462, gnl|loxAfr1|scaffold_28969 (3805-3647) | |
| 215-462, gnl|mm7|chr19 (7093882-7094073) | |
| 215-462, gnl|mm7|chr19 (7094023-7093862) | |
| 215-462, gnl|Mm7|chr19 (7093862-7094112) | |
| 215-462, gnl|oryCun1|scaffold_146409 (627-818) | |
| 215-462, gnl|oryCun1|scaffold_146409 (768-609) | |
| 215-462, gnl|panTro1|chr9 (64477311-64477120) | |
| 215-462, gnl|panTro1|chr9 (64477170-64477328) | |
| 215-462, gnl|rheMac2|chr11 (95371171-95371362) | |
| 215-462, gnl|rheMac2|chr14 (10533843-10533685) | |
| 215-462, gnl|rn3|chr1 (210114700-210114541) | |
| 215-462, gnl|rn3|chr15 (21157754-21157945) | |
| 215-462, gnl|tetNig1|chrUn_random (21131167-21131424) | |
| 215-462, gnl|tetNig1|chrUn_random (21131380-21131149) | |
| 215-462, gnl|xenTro1|scaffold_1034 (276056-275871) | |
| 215-462, gnl|xenTro1|scaffold_1034 (275915-276065) | |
| 234-372, gnl|bosTau2|chr16 (54971437-54971575) | |
| 234-372, gnl|canFam2|chr7 (12726203-12726354) | |
| 234-372, gnl|danRer3|chr22 (48594132-48594278) | |
| 234-372, gnl|dasNov1|scaffold_19650 (62183-62334) | |
| 234-372, gnl|echTel1|scaffold_294086 (13896-13738) | |
| 234-372, gnl|fr1|chrUn (224912442-224912589) | |
| 234-372, gnl|galGal2|chr3 (18635241-18635090) | |
| 234-372, gnl|hg17|chr1 (207874450-207874601) | |
| 234-372, gnl|Hg17|chr1 (207874460-207874598) | |
| 234-372, gnl|loxAfr1|scaffold_10777 (40044-40195) | |
| 234-372, gnl|mm7|chr1 (191654721-191654570) | |
| 234-372, gnl|Mm7|chr1 (191654709-191654571) | |
| 234-372, gnl|monDom2|scaffold_13 (14992965-14993116) | |
| 234-372, gnl|oryCun1|scaffold_191303 (51299-51148) | |
| 234-372, gnl|panTro1|chr1 (191504560-191504711) | |
| 234-372, gnl|rheMac2|chr1 (159097945-159097794) | |
| 234-372, gnl|rn3|chr1 (210114551-210114702) | |
| 234-372, gnl|tetNig1|chrUn_random (47775521-47775375) | |
| 234-372, gnl|xenTro1|scaffold_30 (53300-53451) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (0.126502) |