Non-Coding RNA Search

reye1601b_k3r1.y1

Sequence:


               
               CCAGACCTGGAAGTCGCCTGAAGCAGCCAATTGGGCAGATTCCTCTGGAATCTTCCCCTC
CGGTAGGACTCTCAATTGAAGAGGTGGAGAGGCTAAACACCCCTCGCCCTAGAAACCCGA
GTATCTGCAGTGCAGATCATGGGAGGTCTTCTTCAGAAGAGGACTGCAGAAGGCCGCTGT
CCAGAACCAGGAACCCAGCGGATGGCATTCCGGCTCCAGAATCTTCTTCTGATAGTGACT
CACACGAGTCTTTCACTTGCTCAGAAATGGAATATGACAGGGAAAAGCCAATGGTATACA
CTTCCAGGATGCCCAAATTATCTCAAGTCAATGAATCTGATGCAGATGATGAAGATAATT
ATGGAGCCAGACTGAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGACCTGGAAGTCGCCTGAAGCAGCCAATTGGGCAGATTCCTCTGGAATCTTCCCCTC
CGGTAGGACTCTCAATTGAAGAGGTGGAGAGGCTAAACACCCCTCGCCCTAGAAACCCGA
GTATCTGCAGTGCAGATCATGGGAGGTCTTCTTCAGAAGAGGACTGCAGAAGGCCGCTGT
CCAGAACCAGGAACCCAGCGGATGGCATTCCGGCTCCAGAATCTTCTTCTGATAGTGACT
CACACGAGTCTTTCACTTGCTCAGAAATGGAATATGACAGGGAAAAGCCAATGGTATACA
CTTCCAGGATGCCCAAATTATCTCAAGTCAATGAATCTGATGCAGATGATGAAGATAATT
ATGGAGCCAGACTGAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9H5T6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9H5T6_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               42-321, - strand, RNAz p=0.958463
               

               
               199-318, - strand, RNAz p=0.919557

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-321, - strand, RNAz p=0.958463
               

               
               199-318, - strand, RNAz p=0.919557

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               3-378, gnl|bosTau2|chr20 (25452931-25452556)
               

               
               3-378, gnl|canFam2|chr19 (18164116-18163845)
               

               
               3-378, gnl|danRer3|chr23 (19479024-19478753)
               

               
               3-378, gnl|dasNov1|scaffold_13548 (53402-53131)
               

               
               3-378, gnl|echTel1|scaffold_309058 (3994-3723)
               

               
               3-378, gnl|fr1|chrUn (27809892-27809621)
               

               
               3-378, gnl|galGal2|chr4 (53045869-53045598)
               

               
               3-378, gnl|hg17|chr4 (126769872-126770143)
               

               
               3-378, gnl|Hg17|chr4 (126769875-126770250)
               

               
               3-378, gnl|mm7|chr3 (38827372-38827643)
               

               
               3-378, gnl|Mm7|chr3 (38827375-38827750)
               

               
               3-378, gnl|monDom2|scaffold_32 (1486561-1486290)
               

               
               3-378, gnl|oryCun1|scaffold_200176 (158766-159037)
               

               
               3-378, gnl|panTro1|chr3 (143624648-143624919)
               

               
               3-378, gnl|rheMac2|chr5 (117832081-117832352)
               

               
               3-378, gnl|rn3|chr2 (125923761-125924032)
               

               
               3-378, gnl|tetNig1|chr20 (2682333-2682604)
               

               
               3-378, gnl|xenTro1|scaffold_426 (1016935-1016664)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-378, gnl|bosTau2|chr20 (25452931-25452556)
               

               
               3-378, gnl|canFam2|chr19 (18164116-18163845)
               

               
               3-378, gnl|danRer3|chr23 (19479024-19478753)
               

               
               3-378, gnl|dasNov1|scaffold_13548 (53402-53131)
               

               
               3-378, gnl|echTel1|scaffold_309058 (3994-3723)
               

               
               3-378, gnl|fr1|chrUn (27809892-27809621)
               

               
               3-378, gnl|galGal2|chr4 (53045869-53045598)
               

               
               3-378, gnl|hg17|chr4 (126769872-126770143)
               

               
               3-378, gnl|Hg17|chr4 (126769875-126770250)
               

               
               3-378, gnl|mm7|chr3 (38827372-38827643)
               

               
               3-378, gnl|Mm7|chr3 (38827375-38827750)
               

               
               3-378, gnl|monDom2|scaffold_32 (1486561-1486290)
               

               
               3-378, gnl|oryCun1|scaffold_200176 (158766-159037)
               

               
               3-378, gnl|panTro1|chr3 (143624648-143624919)
               

               
               3-378, gnl|rheMac2|chr5 (117832081-117832352)
               

               
               3-378, gnl|rn3|chr2 (125923761-125924032)
               

               
               3-378, gnl|tetNig1|chr20 (2682333-2682604)
               

               
               3-378, gnl|xenTro1|scaffold_426 (1016935-1016664)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	42-321, - strand, RNAz p=0.958463
	199-318, - strand, RNAz p=0.919557

	3-378, gnl\|bosTau2\|chr20 (25452931-25452556)
	3-378, gnl\|canFam2\|chr19 (18164116-18163845)
	3-378, gnl\|danRer3\|chr23 (19479024-19478753)
	3-378, gnl\|dasNov1\|scaffold_13548 (53402-53131)
	3-378, gnl\|echTel1\|scaffold_309058 (3994-3723)
	3-378, gnl\|fr1\|chrUn (27809892-27809621)
	3-378, gnl\|galGal2\|chr4 (53045869-53045598)
	3-378, gnl\|hg17\|chr4 (126769872-126770143)
	3-378, gnl\|Hg17\|chr4 (126769875-126770250)
	3-378, gnl\|mm7\|chr3 (38827372-38827643)
	3-378, gnl\|Mm7\|chr3 (38827375-38827750)
	3-378, gnl\|monDom2\|scaffold_32 (1486561-1486290)
	3-378, gnl\|oryCun1\|scaffold_200176 (158766-159037)
	3-378, gnl\|panTro1\|chr3 (143624648-143624919)
	3-378, gnl\|rheMac2\|chr5 (117832081-117832352)
	3-378, gnl\|rn3\|chr2 (125923761-125924032)
	3-378, gnl\|tetNig1\|chr20 (2682333-2682604)
	3-378, gnl\|xenTro1\|scaffold_426 (1016935-1016664)